View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218R-Insertion-5 (Length: 508)
Name: NF2218R-Insertion-5
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218R-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 53659940 - 53660208
Alignment:
| Q |
9 |
ctttcttgtaagcagctcccagagaacaattgcaaagctaaagacatcagctttgtgatcataaggtttatgctcaataacctttcatatgtaagagaga |
108 |
Q |
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| T |
53659940 |
ctttcttgtaagcagctcccagagaacaattgcaaagctaaagacatcagctttgtgatcatatggtttatgctcaataacctttcatatgtaagagaga |
53660039 |
T |
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| Q |
109 |
tcacaaattagttgtaattgttttga-caaagacaagaataaaccacacacaagttggaagatcaaaggaaaaagaggaaagaacaagacacaaaagttt |
207 |
Q |
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| T |
53660040 |
tcacaaattagttgtaattgttttgaccaaagacaagaataaaccacacacaagtcggaagatcaaaggaaaaagaggaaagaacaagacacaaaagttt |
53660139 |
T |
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| Q |
208 |
acgcgatttggtcaatgtgacctatgtcacnnnnnnntcagtgagatacttatttcgttaggacgaaca |
276 |
Q |
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| T |
53660140 |
acgcgatttggtcaatgtgacctacgtcacaaagaaatcagtgagatacttatttcgttaggacgaaca |
53660208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 273 - 508
Target Start/End: Original strand, 53660244 - 53660479
Alignment:
| Q |
273 |
aacaagagagatggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgnnnnnnnctaaaattcatgttagct |
372 |
Q |
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| T |
53660244 |
aacaagagagagggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgaaaaaaactaaaattcatgttagct |
53660343 |
T |
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| Q |
373 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaacttgtctaggttcgtcttaaacttcctcatccaaacct |
472 |
Q |
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| T |
53660344 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaactagtctaggttcgtcttaaacttcctcatccaaacct |
53660443 |
T |
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| Q |
473 |
gtaggttatacatttaaaaatttagaagtaaccaac |
508 |
Q |
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| T |
53660444 |
gtaggttatacattttaaaatttagaagtaaccaac |
53660479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 8449432 - 8449516
Alignment:
| Q |
9 |
ctttcttgtaagcagctcccagagaacaattgcaaagctaaagacatcagctttgtgatcataaggtttatgctcaataaccttt |
93 |
Q |
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| T |
8449432 |
ctttcttgtgagcagctcccaaataataatcccaaagctgaaaacatcagctttctggttatatggcttatgctcaataaccttt |
8449516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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