View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218R-Insertion-6 (Length: 416)
Name: NF2218R-Insertion-6
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218R-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 2671477 - 2671882
Alignment:
| Q |
7 |
caaaaatttgatacagaatagattgtagtcaatgtagaagctagaaaaagttgatttaaccagaatcaatttcaatcatctgaataactttaaatgaaac |
106 |
Q |
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| T |
2671477 |
caaaaatttgatatggaattgatcgtagtcgatgtagaagctagaaaaagttgatttaaccagaatcaatttcaatcatctgaataactttaaatgaaac |
2671576 |
T |
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| Q |
107 |
caaaacatcttgagaaatcattgagattgtgtttgatgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttagttactcaactagt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2671577 |
caaaacatcttgagaaatcattgagattgtgtttgacgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttaattactcaactagt |
2671676 |
T |
|
| Q |
207 |
ctaggactcttggtgccatcatttgtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagttttgtttgacaaaaaatagtagataa |
306 |
Q |
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| T |
2671677 |
ctaggactcttggtgccatcatttgtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagccttgtttgacaaaaaatagtagataa |
2671776 |
T |
|
| Q |
307 |
ttgataagctagtttataacagatgaacttattttaaaatttaagaagagtgccactcctcattcaactcttccatcaactcctccttcaattcgtccgt |
406 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |
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| T |
2671777 |
ctgataaactagtttataacggatgaacttattttaaaatttaagaagagtgccactcctcgttcaactcttccatcaactcctccttcaattcatcctt |
2671876 |
T |
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| Q |
407 |
caactc |
412 |
Q |
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|||||| |
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| T |
2671877 |
caactc |
2671882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 2671855 - 2671910
Alignment:
| Q |
361 |
actcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttcc |
416 |
Q |
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| T |
2671855 |
actcctccttcaattcatccttcaactcctccttcaattcgtccgtcaactcttcc |
2671910 |
T |
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