View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218R-Insertion-8 (Length: 362)
Name: NF2218R-Insertion-8
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218R-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 44379561 - 44379915
Alignment:
| Q |
8 |
agatggaaaattccaagaatacatcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcac |
107 |
Q |
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| T |
44379561 |
agatggaaaattccaagaatacatcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcac |
44379660 |
T |
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| Q |
108 |
atattttaaaggctatgattcaagctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattac |
207 |
Q |
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| T |
44379661 |
atattttaaaggctatgattcaagctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattac |
44379760 |
T |
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| Q |
208 |
actcactcttgcagtgtcatcagcattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacatt |
307 |
Q |
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| T |
44379761 |
actcactcttgcagtgtcatcagcattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacatt |
44379860 |
T |
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| Q |
308 |
cagaaacacaatcacatgaatcttcaaaaccctcttcaaaaacaactcttatctg |
362 |
Q |
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| T |
44379861 |
cagaaacacaatcacatgaatcttcaaaaccctcttcaaaaacaactcttatctg |
44379915 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 28846887 - 28846937
Alignment:
| Q |
250 |
attcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaac |
300 |
Q |
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| T |
28846887 |
attcatgttatgtgaccctgcaattagtctcccattagtgtccattgaaac |
28846937 |
T |
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