View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218R-Insertion-9 (Length: 346)
Name: NF2218R-Insertion-9
Description: NF2218R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218R-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 42034183 - 42034364
Alignment:
| Q |
8 |
acttggaactaaaaaacataaacattcaagttaatatcgcatcgttgacaacttcaggttcacaagctacattgtcaactactaccggtgtttcttcttt |
107 |
Q |
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| T |
42034183 |
acttggaactaaaaaacaaaaacattcaagttaatatcgcatcgttgacaagttcaggttcacaagctacattgtcaactactaccggtgtttcttcttt |
42034282 |
T |
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| Q |
108 |
atttcatctaattagttccttaatta--------ctttggcaatgccattcagtttataaaattgtttctagaacatgacaa |
181 |
Q |
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| T |
42034283 |
atttcatctaattagttccttaattactctatatctttggcaatgccatacagtttgtaaaattgtttctagaacatgacaa |
42034364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 42034400 - 42034442
Alignment:
| Q |
201 |
tttgtcataattaaaccacaacataacttgttatctcacgtac |
243 |
Q |
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| T |
42034400 |
tttgtcataattaaaccacaacataacttgttatctcacgtac |
42034442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 42034507 - 42034545
Alignment:
| Q |
308 |
gtttgtcatgtgttgctccgttggtattgtgctgttatg |
346 |
Q |
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| T |
42034507 |
gtttgtcatgtgttgctccgttggtattgtgctgttatg |
42034545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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