View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_1 (Length: 720)
Name: NF2218_high_1
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 238 - 707
Target Start/End: Complemental strand, 38823541 - 38823082
Alignment:
| Q |
238 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttgtttagtgttttagtgattttgtgtattgtata |
337 |
Q |
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| T |
38823541 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttgtttagtgttttagtgattttgtgtattgtata |
38823442 |
T |
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| Q |
338 |
atgtatttctgaattgtgagttgttttgccttatgtctcaatcaacttgaacttgtaggttttcttcacattttgttcggaagggataatcattataatt |
437 |
Q |
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| T |
38823441 |
atgtatttctgaattgtgagttgttttgccttatgtctcaatcaacttgaacttgtaggttttcttcacattttgttcggaagggataatcattataatt |
38823342 |
T |
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| Q |
438 |
agggctaagttagtaaaagaatttcttatgaaatcgggaaaattcaatatattcaactatcattcccttttttgagggaaaagaaaaaagaaagataggt |
537 |
Q |
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| T |
38823341 |
ggg----agttgttt------tgccttatgaaatcgggaaaattcaatatattcaactatcattcccttttttgagggaaaagaaaaaagaaagataggt |
38823252 |
T |
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| Q |
538 |
aagtacatttatttttcttgatttcgtataaaaaaggaaatattttaacttaattaccattttttatcataaccgagtcaaaaggggtagttctcttttt |
637 |
Q |
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| T |
38823251 |
aagtacatttatttttcttgatttcgtataaaaaaggaaatattttaacttaattaccattttttatcataaccgagtcaaaaggggtagttctcttttt |
38823152 |
T |
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| Q |
638 |
gatttttgaaatttattagggagtattttatttccaaaatagctgaaaacattaattttgaggttgtttt |
707 |
Q |
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| T |
38823151 |
gatttttgaaatttattagggagtattttatttccaaaatagctgaaaacattaattttgaggttgtttt |
38823082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 38823702 - 38823537
Alignment:
| Q |
19 |
aacaaggaattcaaaattaagctatagctgtgttacacattatcacaatcttttagctattttaagtacaccgagaatactttagacttagcaaagcaca |
118 |
Q |
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| T |
38823702 |
aacaaggaattcaaaattaagctatagctgtgttacacattatcacaatcttttagctattttaagtacaccgagaatactttagacttagcaaagcaca |
38823603 |
T |
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| Q |
119 |
agtgtagagttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgttt |
184 |
Q |
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| T |
38823602 |
agtgtagagttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgttt |
38823537 |
T |
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