View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218_high_13 (Length: 391)
Name: NF2218_high_13
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 33342818 - 33343173
Alignment:
| Q |
16 |
atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33342818 |
atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
33342917 |
T |
|
| Q |
116 |
actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33342918 |
actagtcgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
33343017 |
T |
|
| Q |
216 |
aggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatagctgcaggtaagagctacaaagatagtataagcataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33343018 |
aggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatagctgcaggtaagagctacaaagatagtgtaagcataa |
33343117 |
T |
|
| Q |
316 |
gaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343118 |
gaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggt |
33343173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 35124094 - 35123739
Alignment:
| Q |
16 |
atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35124094 |
atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt |
35123995 |
T |
|
| Q |
116 |
actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123994 |
actagtcgataaacttaattattggccaaaagaggtttaaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat |
35123895 |
T |
|
| Q |
216 |
aggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatagctgcaggtaagagctacaaagatagtataagcataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123894 |
aggtatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatagctgcaggtaagagctacaaagatagtataagcataa |
35123795 |
T |
|
| Q |
316 |
gaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123794 |
gaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggt |
35123739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 24 - 371
Target Start/End: Original strand, 22507845 - 22508193
Alignment:
| Q |
24 |
cacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttta--ttactagt |
121 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||| || ||||| ||||| ||||||||||||| | |||||||||||||||| ||| ||||| || |
|
|
| T |
22507845 |
cacaggaggatggaaatagagacttgcattgctaaagccgcaaaatatattgaaagcatacaatctgatgatggttcatggtttggttttctttacttgt |
22507944 |
T |
|
| Q |
122 |
tgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaatt---ataattacttaaccaaatagg |
218 |
Q |
| |
|
| |||||||||||| |||||| | |||||||||| |||| ||||||| |||| |||||||||| | || |||||| ||||| || |||| |
|
|
| T |
22507945 |
ccacaaacttaattatgcaacaaaagggatttcaaaaat--tatt--ttaattttataatgtgagtttaaacatttgtaataattcattaacgaactagg |
22508040 |
T |
|
| Q |
219 |
tatggatcatggggaatctgctttacatatgggacatggtttggaataaaagggttgatagctgcaggtaagagctacaaagatagtataagcataagaa |
318 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||| || |||||||||| | |||||| |||| |
|
|
| T |
22508041 |
tacggatcatggggaatttgctttacatatgggacatggtttggaataaaagggcttatagctgctggtagaagatacaaagataacaaaagcattagaa |
22508140 |
T |
|
| Q |
319 |
agggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggt |
371 |
Q |
| |
|
|| |||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
22508141 |
tggcatgtgaatttttgctttccaaacaacacaaactttctggtgggtggggt |
22508193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University