View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_14 (Length: 384)
Name: NF2218_high_14
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 42788086 - 42788457
Alignment:
| Q |
16 |
attataacactgatcagcaatttggtttacaacttcatgatgatgatgatcatgttcttgtgaagaagcagaagaagaaaatgggatgctacaaacataa |
115 |
Q |
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| T |
42788086 |
attataacactgatcagcaatttggtttacaacttcatgatgatgatgatcatgttcttgtgaagaagcagaagaagaaaatgggatgctacaaacataa |
42788185 |
T |
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| Q |
116 |
ttatccttaatggtttcactgtcaaaaactttttgcgcaataggttcaagttgattcactaaatgactattattgtcatagnnnnnnnnnnnnnnnnnnn |
215 |
Q |
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| T |
42788186 |
ttatccttaatggtttcactgtcaaaaactttttgcacaataggttcaagttgattcactaaatgactattactgtcatag---tgctgctgctgctgct |
42788282 |
T |
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| Q |
216 |
nncatgtatatgtatt------tggaatattgataaagttctgatcaacaatattatagttttgggttgcagcatcacttttggtggtgatttgatgatt |
309 |
Q |
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| T |
42788283 |
gccatgtatatgtatttgtatttggaatattgataaaattctgatcaacaatattatagttttgggtggcagcatcacttttggtggtgatttgatgatt |
42788382 |
T |
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| Q |
310 |
ttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatga |
384 |
Q |
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| T |
42788383 |
ttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgatga |
42788457 |
T |
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