View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_16 (Length: 375)
Name: NF2218_high_16
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 53603157 - 53602816
Alignment:
| Q |
1 |
ataattaatcaaaatttatttcatagcaacaaggtagatggcactgtaatggtctttgtaataatattaagttttttaatagaaataaaaatttggttat |
100 |
Q |
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| T |
53603157 |
ataattaatcaaaatttatttcatagcaacaaggtagatggcactgtaat------------aatattaagttttttaatagaaataaaaatttggttat |
53603070 |
T |
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| Q |
101 |
atatctcatttgacagaaaagtaaatattgttgcttcaatacttattccaatttacagtgcaaaacaagcaaataaactaattagtcctagataataaat |
200 |
Q |
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| T |
53603069 |
atatctcatttgatagaaaagtaaatattgttgcttcaatacttattccaatttacagtgcaaaacaagcaaataaact---tagtcctagataataaat |
53602973 |
T |
|
| Q |
201 |
ttaatagtgtaagaatgaaaattgtcacacctactattgagaaaggaggttatatctcttaaagagctcaatgctttcaaaagtggcatgttagcttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53602972 |
ttaatagtgtaagaatgaaaattgtcacacctactattgagaaaggaggttatatctcttaaagagctcaatgctttcaaaagtggcatgttagcttttg |
53602873 |
T |
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| Q |
301 |
attttccattgattttagcaattgggggctttccttgtgaaatgattggggtataaa |
357 |
Q |
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| T |
53602872 |
attttccgttgattttagcaattgggggctttccttgtgaaatgattggggtataaa |
53602816 |
T |
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