View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218_high_18 (Length: 370)
Name: NF2218_high_18
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 99 - 357
Target Start/End: Complemental strand, 23438951 - 23438693
Alignment:
| Q |
99 |
gagatataacgaaacccattacaatggaaaattgttcattatccaaatttgttatccttatacataaagtacataaaccagtataactgttataatataa |
198 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23438951 |
gagatataaccaaacccattacaatggaaaattgttcattatccaaatttattatccttatacataaactacataaaccagtataactgttataatataa |
23438852 |
T |
|
| Q |
199 |
ctggaaggaatgtaaaaagaggtggcatgggaaactttcccagcagcatctacgacatcttgttttgcgatttctccgatatcttctgcagctgccccaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438851 |
ctggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatctacgacatcttgttttgcgatttctccgatatcttctgcagctgccccaa |
23438752 |
T |
|
| Q |
299 |
cattatttgcaccttgctcaaccttatttgcaccttcctcaacagcgcctaggacccct |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438751 |
cattatttgcaccttgctcaaccttatttgcaccttcctcaacagcgcctaggacccct |
23438693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 23430824 - 23430716
Alignment:
| Q |
153 |
tccttatacataaagtacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcagcatctacg |
252 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||| |||| |||| |||||||| |
|
|
| T |
23430824 |
tcctcatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctaca |
23430725 |
T |
|
| Q |
253 |
acatcttgt |
261 |
Q |
| |
|
||||||||| |
|
|
| T |
23430724 |
acatcttgt |
23430716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 23445612 - 23445571
Alignment:
| Q |
161 |
cataaagtacataaaccagtataactgttataatataactgg |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23445612 |
cataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 23439003 - 23438960
Alignment:
| Q |
62 |
ctcccaaaaaataacatgtttttgacatgggaataaggagatat |
105 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
23439003 |
ctcccaaaaaagaacatgtctttgacatgggaataaggagatat |
23438960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 23439054 - 23439021
Alignment:
| Q |
17 |
attaaaagaggtttctcaccatgaattttttatg |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23439054 |
attaaaagaggtttctcaccatgaattttttatg |
23439021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 36243913 - 36243963
Alignment:
| Q |
101 |
gatataacgaaacccattacaatggaaaattgttcattatccaaatttgtt |
151 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
36243913 |
gatataaccaaacccattacaatgaaaaattgttcattatccaactttgtt |
36243963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University