View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_high_2 (Length: 581)

Name: NF2218_high_2
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_high_2
NF2218_high_2
[»] chr7 (3 HSPs)
chr7 (9-565)||(18934476-18935033)
chr7 (9-341)||(34725984-34726314)
chr7 (105-295)||(34716306-34716496)
[»] chr4 (8 HSPs)
chr4 (45-208)||(7887258-7887421)
chr4 (9-116)||(6533479-6533586)
chr4 (11-75)||(4344146-4344210)
chr4 (25-116)||(4134581-4134672)
chr4 (25-75)||(4125236-4125286)
chr4 (25-75)||(4352439-4352489)
chr4 (25-75)||(4321830-4321880)
chr4 (25-75)||(4334702-4334752)
[»] chr6 (5 HSPs)
chr6 (9-116)||(5342778-5342885)
chr6 (27-116)||(5103708-5103797)
chr6 (25-77)||(5424782-5424834)
chr6 (25-75)||(5382775-5382825)
chr6 (8-120)||(5182676-5182788)


Alignment Details
Target: chr7 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 9 - 565
Target Start/End: Original strand, 18934476 - 18935033
Alignment:
Q  9 agatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934476 agatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatt 18934575  T
Q  109 tcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggta 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934576 tcctttaaaatgtacaccagctgactttcatcaagaatgtatcgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggta 18934675  T
Q  209 caagtttagttttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttcactgtacatctact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934676 caagtttagttttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttcactgtacatctact 18934775  T
Q  309 taattatttttcttataaggaaatcaaaataataaaagacagagtagagagggtcctcttactcttacacatcatatacttgcaagaatactcagctata 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934776 taattatttttcttataaggaaatcaaaataataaaagacagagtagagagggtcctcttactcttacacatcatatacttgcaagaatactcagctata 18934875  T
Q  409 caaaaataggaaagaaccaaggggaaaaaagttggacatcctcaataggacgtccattcatctctattggaagtcctaaaattactatcattagtttact 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934876 caaaaataggaaagaaccaaggggaaaaaagttggacatcctcaataggacgtccattcatctctattggaagtcctaaaattactatcattagtttact 18934975  T
Q  509 c-aagttaaatcatctccctgacctggtatttttgctaaaacttcaatatgatgaaga 565  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934976 caaagttaaatcatctccctgacctggtatttttgctaaaacttcaatatgatgaaga 18935033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 34726314 - 34725984
Alignment:
Q  9 agatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatt 108  Q
    |||| |||||||||||||| ||||| ||| |||| ||||||||| | ||| |||||||||||||||| | |||| ||  || ||||||||||||||||||    
T  34726314 agatcaataagcttaaatttcttcagcttgctggcgtacaacttgaaggaaattacaaatatctttccagagatattcgatggctttgttggcatggatt 34726215  T
Q  109 tcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggta 208  Q
    ||||||||| | ||||||||  || ||||||||||||  | | || |||||||| |||||||||||| |||| |||| |||||||| |||||||||||||    
T  34726214 tcctttaaagtatacaccagaagagtttcatcaagaacatttagttgctgttgatttaaaatattcccatcttgaacaagtgtggaagaagtcccaggta 34726115  T
Q  209 caagtttagttttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttcactgtacatctact 308  Q
    ||||||| ||||||||| |||||| |||||||||  |||  || || || ||||||||||  |||  ||||||| |||| || ||||  || | | ||||    
T  34726114 caagttttgttttcttcatgatctagtttcgatatgaat--atcttccttttagaagtaactaacttgagttcagttcagtgtttcatagttcttatact 34726017  T
Q  309 taattatttttcttataaggaaatcaaaataat 341  Q
    ||||||| |||||||| ||| ||||||||||||    
T  34726016 taattatatttcttattaggcaatcaaaataat 34725984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 105 - 295
Target Start/End: Complemental strand, 34716496 - 34716306
Alignment:
Q  105 gatttcctttaaaatgtacaccagctgactttcatcaagaatgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtccca 204  Q
    |||| |||||||||||||||||||| |||||| ||||||||  | | || |||||||| |||||||||||||||||||||||||||||||  |||||| |    
T  34716496 gattccctttaaaatgtacaccagcagacttttatcaagaacatttagttgctgttgatttaaaatattccaatctggaacgagtgtggaaaaagtccta 34716397  T
Q  205 ggtacaagtttagttttcttcttgatcttgtttcgatactaattaatttttctcttagaagtaataaacaggagttcacttcaatggttca 295  Q
     |||||||||||||||||||  |||||| |||||||||||||||||| || || || ||| |||||||| |||||||| |||| |||||||    
T  34716396 agtacaagtttagttttctttatgatctcgtttcgatactaattaatcttccttttggaattaataaactggagttcagttcagtggttca 34716306  T

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Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 7887421 - 7887258
Alignment:
Q  45 tacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaaaatgtacaccagctgactttcatcaaga 144  Q
    ||||||||||||||||||||||||||||||| | | ||||||  | |||| ||||||||||||| |||||||||| || ||| || ||||||||||||||    
T  7887421 tacaacttaatggagattacaaatatctttcaagacatcttaggtggcttagttggcatggattccctttaaaatatatacctgccgactttcatcaaga 7887322  T
Q  145 atgtattgtggctgttgacttaaaatattccaatctggaacgagtgtggaggaagtcccaggta 208  Q
       | | || ||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  7887321 tactctagttgctgttgtcttgaaatattccaatctggaacgagtgtggagaaagtctcaggta 7887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 6533586 - 6533479
Alignment:
Q  9 agatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatt 108  Q
    ||||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||  |||| |||||| | |||||||| || ||| |  |||||||||||    
T  6533586 agatgaataagctcagattgcttcaacttgctggtgtgcaactgaatggagattttaaatgtctttcaagagatcttagatggctgtactggcatggatt 6533487  T
Q  109 tcctttaa 116  Q
    ||| ||||    
T  6533486 tccattaa 6533479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 4344146 - 4344210
Alignment:
Q  11 atgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    ||||| || |||| |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4344146 atgaagaaacttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4344210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 4134672 - 4134581
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 116  Q
    ||||||||||| |||||||||||||||| |||||||||  ||||||||||| | | || | | || ||| |||||| ||| |||||||||||    
T  4134672 attgcttcaaccttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctgtgttggaatgaatttcctttaa 4134581  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4125286 - 4125236
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  4125286 attgcttcaactttctggtgcacaacttgatggagattttaaatatctttc 4125236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 4352439 - 4352489
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    |||||| ||||||||||||||||||||| |||||||||  |||||||||||    
T  4352439 attgctgcaactttctggtgtacaacttgatggagattttaaatatctttc 4352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4321880 - 4321830
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    |||||| ||||||||||||||||||||| |||||||||  |||||| ||||    
T  4321880 attgctgcaactttctggtgtacaacttgatggagattttaaatatatttc 4321830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 4334702 - 4334752
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    |||||||||||||||||| | ||||||| |||||||||  |||||||||||    
T  4334702 attgcttcaactttctggcgcacaacttgatggagattttaaatatctttc 4334752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 5342778 - 5342885
Alignment:
Q  9 agatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatt 108  Q
    |||||||||| || | |||||||||||||||||| ||||||||| |||||||||   | |||||||| | | | || | || ||| |||||| |||||||    
T  5342778 agatgaataaactaagattgcttcaactttctggcgtacaacttgatggagattttgactatctttctagaaaactaagatggctatgttggaatggatt 5342877  T
Q  109 tcctttaa 116  Q
    ||||||||    
T  5342878 tcctttaa 5342885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 5103797 - 5103708
Alignment:
Q  27 tgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggatttcctttaa 116  Q
    |||||||||||||||| ||| ||||| |||||||||   |||||||||||| | |||| | |||||| | |||| |||||||| ||||||    
T  5103797 tgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattttctttaa 5103708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 5424782 - 5424834
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttcga 77  Q
    ||||||||||||| |||| ||| |||||||||||||||  |||||||||||||    
T  5424782 attgcttcaacttgctggggtaaaacttaatggagattttaaatatctttcga 5424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 5382775 - 5382825
Alignment:
Q  25 attgcttcaactttctggtgtacaacttaatggagattacaaatatctttc 75  Q
    ||||||||||||| |||| ||||||||| ||||||||| ||| ||||||||    
T  5382775 attgcttcaacttgctggagtacaacttgatggagatttcaagtatctttc 5382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 5182788 - 5182676
Alignment:
Q  8 gagatgaataagcttaaattgcttcaactttctggtgtacaacttaatggagattacaaatatctttcgaaagatcttatattgctttgttggcatggat 107  Q
    |||||||| || |||| | ||||||||||| || ||||||||||| | || || |   |||||||||| | | |||| |||| ||||| |||| ||||||    
T  5182788 gagatgaaaaaacttagactgcttcaacttgctagtgtacaacttgagggggactttgaatatctttcaagaaatctgatatggctttcttggaatggat 5182689  T
Q  108 ttcctttaaaatg 120  Q
    ||||||| |||||    
T  5182688 ttcctttgaaatg 5182676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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