View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_high_22 (Length: 319)

Name: NF2218_high_22
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_high_22
NF2218_high_22
[»] chr5 (1 HSPs)
chr5 (11-302)||(14244436-14244727)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 14244727 - 14244436
Alignment:
Q  11 gtgagatgaaccaatcctgatgaaccagaggacattgcatgaaaagaagatcagttgactccatgtctttgaagcaaagagggaagattgtgtcaagtgc 110  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14244727 gtgacatgaaccaagcctgatgaaccagaggacattgcatgaaaagaagatcagttgactccatgtcttggaagcaaagagggaagattgtgtcaagtgc 14244628  T
Q  111 tacaaccctcctacacaagtttcctctcgttggaatgannnnnnnngccagtctccaaacgaaatttctaactctaggtaagtgaatacaccaaatcttc 210  Q
    |||| |||||||||||||||||||||||||||||||||        |||| |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  14244627 tacatccctcctacacaagtttcctctcgttggaatgattttttttgccaatctccaaatgaaatttctaactctaggtaagtgaatagaccaaatcttc 14244528  T
Q  211 ttccaaatattaccgagagagggagatgaatattctgggagttgggacacctttgtcattagtcattactcagaagatggtaggcagatttt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14244527 ttccaaatattaccgagagagggagatgaatattctgggagttgggacacctttgtcattagtcattactcagaagatggtaggcagatttt 14244436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University