View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_26 (Length: 313)
Name: NF2218_high_26
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 49017890 - 49018130
Alignment:
| Q |
18 |
ttaacaataataaacatcttgctaacaaatgttttaaggaatctataaaaataaattttgtcttcaaaatataaaatttacaacttttaaatacttaaac |
117 |
Q |
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| T |
49017890 |
ttaacaataataaacatcttgctaacaaatgttttaaggaatctataaaaataaattttgtcttcaaaatataaaatttacaacttttaaatacttaaat |
49017989 |
T |
|
| Q |
118 |
aat-actttaaagatatttgttactatttttc-taataataa-tgataatgtgttgtaacagtagttcaaagagtagaagaacgcataaacattttatac |
214 |
Q |
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| T |
49017990 |
aataaccctgaagatatttgttactatttttcttaataataagtgataatgtgttgtaagcgtagttcaaagagtacaagaacgcataaacattttatac |
49018089 |
T |
|
| Q |
215 |
aatgacatttgatatgttggtatgcaagttcgtacttccaa |
255 |
Q |
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| T |
49018090 |
aatgacatttgatatgttggtgtgcaagttcgtacttccaa |
49018130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 49013806 - 49013847
Alignment:
| Q |
50 |
tttaaggaatctataaaaataaattttgtcttcaaaatataa |
91 |
Q |
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| T |
49013806 |
tttaaggatcctataaaaataaattttgtcttgaaaatataa |
49013847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 3527720 - 3527656
Alignment:
| Q |
88 |
ataaaatttacaacttttaaatacttaaacaatactttaaagatatttgttactatttttctaat |
152 |
Q |
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| T |
3527720 |
ataaaagttactacttttatatacttaaacaatgctttaaggatatttgttaccattttcctaat |
3527656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 28108688 - 28108729
Alignment:
| Q |
50 |
tttaaggaatctataaaaataaattttgtcttcaaaatataa |
91 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
28108688 |
tttaaggaatctataaatgtaaattttgtcttgaaaatataa |
28108729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 33621478 - 33621433
Alignment:
| Q |
51 |
ttaaggaatctataaaaataaattttgtcttcaaaatataaaattt |
96 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| |||||||||||||| |
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| T |
33621478 |
ttaaggaatctacaaataaaaattttgtcttaaaaatataaaattt |
33621433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 34993099 - 34993139
Alignment:
| Q |
51 |
ttaaggaatctataaaaataaattttgtcttcaaaatataa |
91 |
Q |
| |
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|||||||||||| ||| |||||||||||||| ||||||||| |
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|
| T |
34993099 |
ttaaggaatctacaaatataaattttgtcttgaaaatataa |
34993139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 15528372 - 15528416
Alignment:
| Q |
63 |
taaaaataaattttgtcttcaaaatataaaatttacaacttttaa |
107 |
Q |
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|||||||||||||||| || ||||||||| |||||||||||||| |
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| T |
15528372 |
taaaaataaattttgtgttgaaaatataacttttacaacttttaa |
15528416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 6102940 - 6102900
Alignment:
| Q |
51 |
ttaaggaatctataaaaataaattttgtcttcaaaatataa |
91 |
Q |
| |
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|||||||||||||||| | ||| |||||||||||||||||| |
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|
| T |
6102940 |
ttaaggaatctataaatagaaaatttgtcttcaaaatataa |
6102900 |
T |
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