View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218_high_27 (Length: 296)
Name: NF2218_high_27
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_27 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 15160705 - 15161000
Alignment:
| Q |
1 |
aaaaaatcatcacaggtagatttgactccaaaatgatacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcctacatga |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15160705 |
aaaaaatcatcagaggtagatttgactccaag-tgatacaccagtaagcgaataatacatatatcctcagattcagggctgttagtttttgcctacatga |
15160803 |
T |
|
| Q |
101 |
attgaaagtgagaattagcaatcaaatcttacatactgatcatactatactcatatagtatgatgaaagtaactcataataatcatgacattaagatcat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15160804 |
attgaaaatgagaattagcaatcaaatcttgcatactgatcatactatactcatatagtatgatgaaagtaactcataataatcatgacattaagatcat |
15160903 |
T |
|
| Q |
201 |
taaacattaagatcactaaacacattgaaa-tgatttatagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgacc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15160904 |
taaacattaagatcactaaacacattgaaacggatttctagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgacc |
15161000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 26465357 - 26465505
Alignment:
| Q |
1 |
aaaaaatcatcacaggtagatttgactccaaaatgatacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcctacatga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26465357 |
aaaaaatcatcacaggtagatt-gactccaaaatgatacaccaataagcgaataatacatctctcctcagattcacggctgttagtttttgcctaca--- |
26465452 |
T |
|
| Q |
101 |
attgaaagtgagaattagcaatcaaatcttacatactgatcatactatactcata |
155 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26465453 |
--tgaaagtgagaattagcaatctaatcttacatattgatcatactatactcata |
26465505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14369778 - 14369937
Alignment:
| Q |
1 |
aaaaaatcatcacaggtagatttgactccaaaatgatacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcctacatga |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
14369778 |
aaaaaatcatcgcaggtagatt-gactccaaaatgtaacaccaataagcgaataatacatctctccttagattcagggctgttaatttttgtctaca--- |
14369873 |
T |
|
| Q |
101 |
attgaaagtgagaattagcaatcaaatcttacatactgatcatactatactcatatagtatgatga |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
14369874 |
--tgaaagtgagaattagcaataaaatcttacataatgatcatactatactcatatagtataatga |
14369937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 24846753 - 24846712
Alignment:
| Q |
125 |
aatcttacatactgatcatactatactcatatagtatgatga |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24846753 |
aatcttacatactgatcatactatactcatatagtttgatga |
24846712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University