View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_28 (Length: 295)
Name: NF2218_high_28
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 8722005 - 8722274
Alignment:
| Q |
15 |
ctctctcaaaactatacaaaaacaacatcaatgacaacctcattttctctcattcatgattgtcttcctgttggattcagattccgtccaacagatcaag |
114 |
Q |
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| T |
8722005 |
ctctctcaaaactatacaaaaacaacatcaatgacaacctcattttctctcattcatgattgtcttcctgttggattcagattccatccaacagatcaag |
8722104 |
T |
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| Q |
115 |
agcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttggga |
214 |
Q |
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| T |
8722105 |
agcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttggga |
8722204 |
T |
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| Q |
215 |
tttaccaggtaaatatcaaacaaaccccattattattttctcataacaatttgatcattttgatatattc |
284 |
Q |
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| T |
8722205 |
tttaccaggtaaatatcaaacaaacctcattattattttcttataacaatgtgatcattttgatatattc |
8722274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 8690720 - 8690867
Alignment:
| Q |
79 |
ttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcat |
178 |
Q |
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| T |
8690720 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtcaacaatgttat |
8690819 |
T |
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| Q |
179 |
agctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaa |
226 |
Q |
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| T |
8690820 |
agctgaagttgatgtatgcaagttcgaaccttgggatttaccaggtaa |
8690867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 8704992 - 8705173
Alignment:
| Q |
79 |
ttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcat |
178 |
Q |
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| T |
8704992 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtaaacaatgttat |
8705091 |
T |
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| Q |
179 |
agctgaagttgatgtattcaagtttaaaccttgggatttaccaggt-aaatatcaaacaaaccccattattattttctcataa |
260 |
Q |
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| T |
8705092 |
agctgaagttgatgtatgcaactatgaaccttgggacttaccaggtaaaaaaacaaacaaa-cccttcattattttctcataa |
8705173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 8740152 - 8740244
Alignment:
| Q |
163 |
ttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatatcaaacaaaccccattattattttct |
255 |
Q |
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| T |
8740152 |
ttgtaaacaatgttatagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttct |
8740244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 8738482 - 8738643
Alignment:
| Q |
60 |
tctctcattcatgattgtcttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaag |
159 |
Q |
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| T |
8738482 |
tctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgttt |
8738581 |
T |
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| Q |
160 |
agtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttacca |
221 |
Q |
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| T |
8738582 |
cccatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattacca |
8738643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 8723418 - 8723565
Alignment:
| Q |
83 |
tgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagct |
182 |
Q |
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| T |
8723418 |
tgttggattcagattttgtccaacaggtgaagagctagttaatcactaccttagaaataagttgcttggtaatgacgccattgtaaacaatgttatagct |
8723517 |
T |
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| Q |
183 |
gaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatat |
230 |
Q |
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| T |
8723518 |
gaagttgatattcgcaagttcgaaccatgggaattaccaggtaaatat |
8723565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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