View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_34 (Length: 252)
Name: NF2218_high_34
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_34 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 38864798 - 38864571
Alignment:
| Q |
18 |
acctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataaca |
117 |
Q |
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| T |
38864798 |
acctaccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataaca |
38864699 |
T |
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| Q |
118 |
ccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatcgaagtat |
217 |
Q |
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| T |
38864698 |
ccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgttgttatctttatcgaagtat |
38864599 |
T |
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| Q |
218 |
tggaaggcagcataaacatgttcatctc |
245 |
Q |
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| T |
38864598 |
tggaaggcagtataaacatgttcttctc |
38864571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 38808595 - 38808818
Alignment:
| Q |
19 |
cctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaagatataacac |
118 |
Q |
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| T |
38808595 |
cctgccgtcatgcatgttatactcatggagagcttgctctagttcttcaatggtgatgtacctaattatggaaaagcagtgagatcagaagatttgaa-- |
38808692 |
T |
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| Q |
119 |
caattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatcgaagtatt |
218 |
Q |
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| T |
38808693 |
caattagtatccaaaggaagggcaaatatatatccaaccatgttggttttacggatttatttaa-ttttctttacccgctgttatctttatcgaagaatt |
38808791 |
T |
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| Q |
219 |
ggaaggcagcataaacatgttcatctc |
245 |
Q |
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| T |
38808792 |
ggaaggcagtataaacatgttcttctc |
38808818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 72968 - 73029
Alignment:
| Q |
20 |
ctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacct |
81 |
Q |
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| T |
72968 |
ctgccatcatgcatgttgtattcacggagagcttgatctagttcttcagtggtaatgaacct |
73029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 73150 - 73206
Alignment:
| Q |
189 |
tttacccgctgttatctttatcgaagtattggaaggcagcataaacatgttcatctc |
245 |
Q |
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| T |
73150 |
tttacccgctgttatctttatcaaagtattggaaggcagtgtaaagatgttcttctc |
73206 |
T |
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