View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_38 (Length: 249)
Name: NF2218_high_38
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 2646993 - 2647213
Alignment:
| Q |
16 |
caaaaacttttttcatttacatacacttgtaccgccattttcgttacactcaataaaacacacattatgataccaaagttgggtcattagagagagtcca |
115 |
Q |
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| T |
2646993 |
caaaaacttttttcatttacatacacttgtaccgctatttccgttgcactcaacaaaacacacattctgataccaaagttgggccattagggagagtccg |
2647092 |
T |
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| Q |
116 |
gagatcatcacattagatctaagagcaatcacaaaagtaagttggacaccatatctaaacccaaagacttacgacattaagtatatgagtcacatatata |
215 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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| T |
2647093 |
gagatcatcacattagacctacgagcaatcacaaaagtgagttggacaccatatctaaacccaaagacttacgacattaaatatacgaatcacatatata |
2647192 |
T |
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| Q |
216 |
ttactcaacattcagtttttc |
236 |
Q |
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|||||||||||||| |||||| |
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| T |
2647193 |
ttactcaacattcattttttc |
2647213 |
T |
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