View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218_high_4 (Length: 532)
Name: NF2218_high_4
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Complemental strand, 2716203 - 2715697
Alignment:
| Q |
15 |
tatcaccaaataaagtgtgaaggacaaatatgtttttagtctcttgaggttcttcgatttgattgttccatttattttaatgtcactcttatatctattc |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2716203 |
tatcatcaaataaagtgtcaaggacaaatatgttcttagtctcttgaggttcttcgatttgattgttccatttattttaatgtgactcttatatctattc |
2716104 |
T |
|
| Q |
115 |
tcagcacatcttgtgctagaatagtttttt-aatatttctttggcttttgcagaaaacaaattatgaaagtaaaagatacattaccttttatcttctttg |
213 |
Q |
| |
|
| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2716103 |
tttgcacatcttgtgctaaaatagtttttttaatatttctttggcttttgaagaaaacaaattatgaaagtaaaagatacattaccttttatcttctttg |
2716004 |
T |
|
| Q |
214 |
taaattagagtttgttttaccttaactcctacaaaactagctatagaaataagttaataatcactaaagtattgcacagtcatta----atgggaaaaga |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
2716003 |
taaatttgagtttgttttaccttaactcctacaaaactagctatagaaataagttaataatcactaaagtattgcacagtcattacactatgggaagaga |
2715904 |
T |
|
| Q |
310 |
acttgatttctatttcaattctgattcactctactaaccttagcatttgtacttttatattaaggagtggtgataaaatataaattttcttgttaataaa |
409 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2715903 |
acttgatttctatttcaactctgattcactctactaaccttagcatttgtacttttatattaaggagtggtgataaaatataaattttcttgttaataaa |
2715804 |
T |
|
| Q |
410 |
ttggc-nnnnnnnaaaaggaatgta-cctttatcggaagtcaacaactagtcactcaaagtaaatatatttgtataaggtacttacatctctaaacacat |
507 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
2715803 |
ttggcttttttttaaaaggaatgtatcctttatcggaagtcaacaactagtcacccaaagtaaagatatttgtataaggtacttacatctctaaacacgt |
2715704 |
T |
|
| Q |
508 |
actattt |
514 |
Q |
| |
|
||||||| |
|
|
| T |
2715703 |
actattt |
2715697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 2703759 - 2703679
Alignment:
| Q |
434 |
cctttatcggaagtcaacaactagtcactcaaagtaaatatatttgtataaggtacttacatctctaaacacatactattt |
514 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
2703759 |
cctttatcggaagtcgacaattagtctttcaaagtacatatatttgtataaggtactaacatctcttaacacatattattt |
2703679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 2703841 - 2703792
Alignment:
| Q |
342 |
actaaccttagcatttgtacttttatattaaggagtggtgataaaatataaa |
393 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2703841 |
actaaccttagcatttgtactt--atattaaggagtggtattaaaatataaa |
2703792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University