View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_41 (Length: 235)
Name: NF2218_high_41
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 42215669 - 42215445
Alignment:
| Q |
10 |
aagaatattcaaaaagcagaatatatgcatcaaataattgcaatgacttagttgaccaactgctttgaaaaagagcacagtaattgaacacacnnnnnnn |
109 |
Q |
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| T |
42215669 |
aagaaaattcaaaaagcagaatatatgcatcaaacaattgcaatgacttagttgaccaactgctttgaaaaagagcacagtaattgaacaaa-aaagaaa |
42215571 |
T |
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| Q |
110 |
nctcaacgaggttaattaactgctagtggagtagtgggcatatactatagctaatagggattataatcattatacagaaaatatgctggaagggattaaa |
209 |
Q |
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| T |
42215570 |
actcaacgaggttaattaactgctagtggagtagtgggcatatactatagctaatagggattataatcattatacagaaaatatgctggaagggattaaa |
42215471 |
T |
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| Q |
210 |
ttcataagtagttagctaactactta |
235 |
Q |
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| T |
42215470 |
ttcataagtagttagctaactactta |
42215445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 42208568 - 42208533
Alignment:
| Q |
47 |
ttgcaatgacttagttgaccaactgctttgaaaaag |
82 |
Q |
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| T |
42208568 |
ttgcaatgacttagttgaccaaatgctttgaaaaag |
42208533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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