View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_42 (Length: 235)
Name: NF2218_high_42
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 39226158 - 39226359
Alignment:
| Q |
19 |
caaattagtgtctctatttgaacaaaatgctaacaacttcacaatgtatctgtgccttattctaccaagtgtttttatttcagctgataaaccgttatca |
118 |
Q |
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| T |
39226158 |
caaattagtgtctctatttgaacaaaatgctaacaacttcacaatgtatctgtgccttattctaccaagtgtttttatttcagctgataaaccattatca |
39226257 |
T |
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| Q |
119 |
taagaacaacctttgttaattcctaataactttttcacagctactttttctccatttggcattgttcctccatatacaacaccagcacctcctcttccta |
218 |
Q |
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| T |
39226258 |
taagaacaacctttgttaattcctaataactttttcacagctactttttctccatttggcattgttcctccatatacaacaccagcacctcctcttccta |
39226357 |
T |
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| Q |
219 |
tg |
220 |
Q |
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|| |
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| T |
39226358 |
tg |
39226359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 16734949 - 16734858
Alignment:
| Q |
128 |
cctttgttaattcctaataactttttcacagctactttttctccatttggcattgttcctccatatacaacaccagcacctcctcttcctat |
219 |
Q |
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|||||||| |||||||| || || |||||||| | || ||||||||||||||||||||| || |||||||| || || ||||||||||| |
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| T |
16734949 |
cctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctcttcctat |
16734858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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