View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_high_5 (Length: 486)
Name: NF2218_high_5
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 418014 - 418396
Alignment:
| Q |
16 |
atcaactcacaatgataaaagtgttataaaagaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacannnnnnnnnnnnnncc |
115 |
Q |
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| T |
418014 |
atcaactcacaatgataaaagtgttataaa-gaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacatctctctct------c |
418106 |
T |
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| Q |
116 |
actcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaaatg |
215 |
Q |
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| T |
418107 |
tctcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaaatg |
418206 |
T |
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| Q |
216 |
ccataaaacaaaacacaataaaaacatgatgctcccactattttaaattaagtgtaattgtataacatatatatagatttatttttggattgagatag-- |
313 |
Q |
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| T |
418207 |
ccat-----aaaacacaataaaaacatgatgctcccactattttaaattaagtataattgtataacatatatatagatttatttttggattgagatagat |
418301 |
T |
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| Q |
314 |
-------------------agtatgatatgattaaactttatttttgggttatttgttaagactagaagtggtatgtacttagcaaagcaatagg |
389 |
Q |
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| T |
418302 |
agatagatagtcatagtatagtatgatatgatttaactttatttttgggttatttgttaagactagaagtggtatgtacttagcaatgcaatagg |
418396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 418423 - 418469
Alignment:
| Q |
421 |
tgtgttgtgtactatactatactatactatgtgatagagagcatctg |
467 |
Q |
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| T |
418423 |
tgtgttgtgtactatactatactatactatgtgatagagagcatctg |
418469 |
T |
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