View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_12 (Length: 446)
Name: NF2218_low_12
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 2671477 - 2671890
Alignment:
| Q |
16 |
caaaaatttgatacagaatagattgtagtcaatgtagaagctagaaaaagttgatttaaccagaatcaatttcaatcatctgaataactttaaatgaaac |
115 |
Q |
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| T |
2671477 |
caaaaatttgatatggaattgatcgtagtcgatgtagaagctagaaaaagttgatttaaccagaatcaatttcaatcatctgaataactttaaatgaaac |
2671576 |
T |
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| Q |
116 |
caaaacatcttgagaaatcattgagattgtgtttgatgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttagttactcaactagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2671577 |
caaaacatcttgagaaatcattgagattgtgtttgacgatctgaatgtgtaacgtggaaccaaaaaggtaccaagtagtctatttaattactcaactagt |
2671676 |
T |
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| Q |
216 |
ctaggactcttggtgccatcatttgtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagttttgtttgacaaaaaatagtagataa |
315 |
Q |
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| T |
2671677 |
ctaggactcttggtgccatcatttgtagaggttataagttcaagagacaaatgtcaaaataaccgcataaaagccttgtttgacaaaaaatagtagataa |
2671776 |
T |
|
| Q |
316 |
ttgataagctagtttataacagatgaacttattttaaaatttaagaagagtgccactcctcattcaactcttccatcaactcctccttcaattcgtccgt |
415 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |
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| T |
2671777 |
ctgataaactagtttataacggatgaacttattttaaaatttaagaagagtgccactcctcgttcaactcttccatcaactcctccttcaattcatcctt |
2671876 |
T |
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| Q |
416 |
caactcttccttca |
429 |
Q |
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| T |
2671877 |
caactcctccttca |
2671890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 2671855 - 2671915
Alignment:
| Q |
370 |
actcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttccttcat |
430 |
Q |
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||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2671855 |
actcctccttcaattcatccttcaactcctccttcaattcgtccgtcaactcttccttcat |
2671915 |
T |
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