View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_15 (Length: 435)
Name: NF2218_low_15
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Complemental strand, 35351471 - 35351066
Alignment:
| Q |
23 |
gcacgtagccatactcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttagaacaactccaataacaactcttcttgttatatataa |
122 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
35351471 |
gcacgtagccatgctcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttaggacaactccaataacaactcttcttgttatata--a |
35351374 |
T |
|
| Q |
123 |
cacacaaactctctaatctaactcaatttcaaaactcaactcacacaactagtaccctagtatatcatatatttgctaattccattttcttcttttaaat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35351373 |
cacacaaactctctaatctaactcaatttcaaaactcaactcacacagctagtaccctagtatatcatatatt-gctaattccattttcttcttttaaat |
35351275 |
T |
|
| Q |
223 |
acaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttccatggtcaatactgctccaaagtgcaatcatgctgcatatggtgaatgtgat |
322 |
Q |
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| T |
35351274 |
acaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttccattgtcaatactgctccaaagtgcaatcatgctgcatatggtgaatgtgat |
35351175 |
T |
|
| Q |
323 |
gttatttggtttggatatgcatctacaatatgcattaaaggaaattattacattaggaatgaagattcaggttctgctgatctagttacatacatggaag |
422 |
Q |
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||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351174 |
gttgattcgtttggctatgcatctacagtatgcattaaaggaaattattacattaggaatgaagattcaggttctgctgatctagttacatacatggaag |
35351075 |
T |
|
| Q |
423 |
gtgatgatg |
431 |
Q |
| |
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||||||||| |
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| T |
35351074 |
gtgatgatg |
35351066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 85 - 431
Target Start/End: Complemental strand, 35340986 - 35340644
Alignment:
| Q |
85 |
agaacaactccaataacaactcttcttgttatatataacacacaaactctctaatctaactcaatttcaaaactcaactcacacaact-----agtaccc |
179 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| |||||| |
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| T |
35340986 |
agaacaactccaacaagttctcttcttgttatatatatcacacaaactctccaat---act---------aactcaactcacacaacttcttgtgtaccc |
35340899 |
T |
|
| Q |
180 |
tagtatatcatatatttgc----taattccattttcttcttttaaatacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttccatgg |
275 |
Q |
| |
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||| |||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||| || | ||| |||||||||| ||||||||||||||| |
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| T |
35340898 |
tagcatatcatata-ttgctaattaattccattttcttcttttaatcacacacttttaacatagccaacctcacaaccaaaatgacatccatttccatgg |
35340800 |
T |
|
| Q |
276 |
tcaatactgctccaaagtgcaatcatgctgcatatggtgaatgtgatgttatttggtttggatatgcatctacaatatgcattaaaggaaattattacat |
375 |
Q |
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|||||| | ||||||| ||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||| | |
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| T |
35340799 |
tcaatatttctccaaaatgcaatcatgctgcatatggtgaatgtgacggtgattggtttggttatgcatctacaatatgtattaaaggaaattattactt |
35340700 |
T |
|
| Q |
376 |
taggaatgaagattcaggttctgctgatctagttacatacatggaaggtgatgatg |
431 |
Q |
| |
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||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||| |
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| T |
35340699 |
taggaatgaagattcaggttctgctcatctaattgcatacatagaaggtgatgatg |
35340644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 35356021 - 35355787
Alignment:
| Q |
36 |
ctcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttagaacaactccaataacaactcttcttgttatatataacacacaaactctc |
135 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || |||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
35356021 |
ctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtgttagaacaactccaacaac-actctttttgttatatataacacacaaactctc |
35355923 |
T |
|
| Q |
136 |
taat-ctaactcaatttcaaaactcaactcacacaactagtacccta--gtatatcatatatttgctaattccattttcttctttt-aaatacaaacttt |
231 |
Q |
| |
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||| ||||||||| || ||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||||| || | | ||||| |
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| T |
35355922 |
caatcctaactcaa--acacaactcaactcacacaac---taccttagtgtatatcatata---actaattccattttcttcttttccaacatacacttt |
35355831 |
T |
|
| Q |
232 |
tcacataatcagcgtcaaaaccaaaatggcatccatttccatgg |
275 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
35355830 |
ttacatagcaagcgtcaaaaccaaaatggcatcaatttctatgg |
35355787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 35374649 - 35374536
Alignment:
| Q |
36 |
ctcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttagaacaactccaataacaactcttcttgttatatataacacacaaactctc |
135 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
35374649 |
ctcacaccttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactccaacaacaactctttttgttatatataacacacaaactctc |
35374550 |
T |
|
| Q |
136 |
taat-ctaactcaa |
148 |
Q |
| |
|
||| ||||||||| |
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| T |
35374549 |
caatcctaactcaa |
35374536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 35347941 - 35348182
Alignment:
| Q |
22 |
ggcacgtagccatactcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttagaacaactccaataacaactcttcttgttatatata |
121 |
Q |
| |
|
||||||||||||| |||| ||||| |||||| |||||||||| || |||||||||||||||||||| |||| || ||| |||||||||||||||||| |
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| T |
35347941 |
ggcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtttgcttgtgttagaactactc-aacaacttctcttcttgttatatata |
35348039 |
T |
|
| Q |
122 |
acacacaaactctctaatc-taactcaatttcaaaactcaactcacacaactagtaccctagtatatcatatatttgctaattccattttcttcttt-ta |
219 |
Q |
| |
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|||||||||||||| |||| |||||||| || | ||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| || |
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| T |
35348040 |
acacacaaactctccaatcctaactcaaa--cacagctcaactcacacaacta---ccttagcatatcatataa---ctaattccattttcttctttata |
35348131 |
T |
|
| Q |
220 |
a-atacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttc |
270 |
Q |
| |
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| |||| | |||| ||||| |||||| ||||| ||||||||||||||||| |
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| T |
35348132 |
acatac-attttttaacatagccagcgtaaaaacaaaaatggcatccatttc |
35348182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 35368511 - 35368354
Alignment:
| Q |
22 |
ggcacgtagccatactcacaccttta-gcaaagatacacacttcctgcatggtttgcttgtgttagaacaactccaataacaactcttcttgt--tatat |
118 |
Q |
| |
|
||||||||||||| |||| |||||| ||||| ||||||||||| || |||||||||||||||||||||||||||| ||| |||||| || ||||| |
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| T |
35368511 |
ggcacgtagccatgctcattcctttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactccaacaacttatcttctagttatatat |
35368412 |
T |
|
| Q |
119 |
ataacacacaaactctctaat-ctaactcaatt--tcaaaactcaactcacacaacta |
173 |
Q |
| |
|
||||||||||||||||| ||| |||||||| | || ||||||||||||||||||| |
|
|
| T |
35368411 |
ataacacacaaactctccaatggtaactcaaataaacacaactcaactcacacaacta |
35368354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 35343419 - 35343491
Alignment:
| Q |
198 |
ctaattccattttcttcttttaaatacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttc |
270 |
Q |
| |
|
||||||||||||||||||||| || | | |||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
35343419 |
ctaattccattttcttctttttaacatacacttttcacatagccagcgtaaaaaccaaaatggcatccatttc |
35343491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 35335885 - 35335824
Alignment:
| Q |
29 |
agccatactcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttagaaca |
90 |
Q |
| |
|
|||||| |||||||||| |||||| | ||||||||||||| ||||||||||||| ||||||| |
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|
| T |
35335885 |
agccatgctcacaccttaagcaaacacacacacttcctgcgtggtttgcttgtgctagaaca |
35335824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 35371790 - 35371732
Alignment:
| Q |
111 |
tgttatatataacacacaaactctctaa-tctaactcaatttcaaaactcaactcacacaa |
170 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
35371790 |
tgttatatataacacacaaactctccaattctaactcaa--acacaactcaactcacacaa |
35371732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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