View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_16 (Length: 425)

Name: NF2218_low_16
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_16
NF2218_low_16
[»] chr7 (44 HSPs)
chr7 (17-418)||(19350966-19351367)
chr7 (19-336)||(19357681-19358001)
chr7 (17-315)||(19721793-19722088)
chr7 (17-336)||(19779374-19779693)
chr7 (17-336)||(19887690-19888009)
chr7 (197-325)||(19344565-19344693)
chr7 (207-339)||(660823-660955)
chr7 (82-318)||(19325982-19326218)
chr7 (217-326)||(12819905-12820014)
chr7 (245-326)||(29454092-29454173)
chr7 (244-335)||(22520244-22520335)
chr7 (244-326)||(14076677-14076759)
chr7 (244-326)||(14386705-14386787)
chr7 (94-137)||(16839559-16839602)
chr7 (254-313)||(19604465-19604524)
chr7 (245-336)||(29430980-29431071)
chr7 (239-313)||(18952907-18952981)
chr7 (239-313)||(18982954-18983028)
chr7 (239-313)||(18997600-18997674)
chr7 (207-313)||(22070073-22070179)
chr7 (254-336)||(29874520-29874602)
chr7 (241-317)||(22028624-22028700)
chr7 (207-323)||(22080830-22080946)
chr7 (245-292)||(9807824-9807871)
chr7 (94-137)||(16846642-16846685)
chr7 (241-308)||(22021388-22021455)
chr7 (94-136)||(18326070-18326112)
chr7 (245-311)||(21218712-21218778)
chr7 (244-318)||(22063641-22063715)
chr7 (208-318)||(22100456-22100566)
chr7 (247-329)||(24002201-24002283)
chr7 (245-295)||(26256775-26256825)
chr7 (245-295)||(29106814-29106864)
chr7 (254-311)||(19597659-19597716)
chr7 (98-135)||(22069964-22070001)
chr7 (245-326)||(29859454-29859535)
chr7 (241-313)||(1985957-1986029)
chr7 (262-326)||(6864796-6864860)
chr7 (97-137)||(9807676-9807716)
chr7 (94-138)||(14076544-14076588)
chr7 (94-138)||(14386572-14386616)
chr7 (247-295)||(15443966-15444014)
chr7 (205-313)||(15571897-15572005)
chr7 (245-313)||(29899374-29899442)
[»] chr2 (6 HSPs)
chr2 (17-336)||(18913536-18913855)
chr2 (17-336)||(18908788-18909107)
chr2 (68-336)||(18920744-18921012)
chr2 (241-326)||(554472-554557)
chr2 (268-313)||(14514923-14514968)
chr2 (244-292)||(20975557-20975605)
[»] scaffold0464 (1 HSPs)
scaffold0464 (21-336)||(7837-8152)
[»] chr3 (3 HSPs)
chr3 (17-336)||(32578844-32579163)
chr3 (51-336)||(12734769-12735054)
chr3 (254-326)||(3625743-3625815)
[»] chr6 (9 HSPs)
chr6 (19-333)||(14749171-14749485)
chr6 (197-315)||(24254426-24254544)
chr6 (241-313)||(6921352-6921424)
chr6 (197-313)||(6947882-6947998)
chr6 (197-316)||(6954518-6954637)
chr6 (202-326)||(20770607-20770731)
chr6 (245-309)||(24950150-24950214)
chr6 (256-326)||(17369675-17369745)
chr6 (241-313)||(6935220-6935292)
[»] chr4 (8 HSPs)
chr4 (244-324)||(53774839-53774919)
chr4 (245-326)||(3565744-3565825)
chr4 (245-326)||(3557726-3557807)
chr4 (244-326)||(11970971-11971053)
chr4 (244-334)||(11981664-11981754)
chr4 (205-326)||(53790513-53790634)
chr4 (256-326)||(3560947-3561017)
chr4 (254-295)||(1686305-1686346)
[»] chr5 (7 HSPs)
chr5 (202-317)||(29647633-29647748)
chr5 (241-332)||(28763888-28763979)
chr5 (244-317)||(29597550-29597623)
chr5 (244-323)||(29642358-29642437)
chr5 (254-326)||(18964819-18964891)
chr5 (94-136)||(18965012-18965054)
chr5 (247-295)||(23086784-23086832)
[»] chr1 (3 HSPs)
chr1 (245-335)||(4366475-4366565)
chr1 (245-326)||(39379050-39379131)
chr1 (248-313)||(4014967-4015032)
[»] scaffold0867 (1 HSPs)
scaffold0867 (208-318)||(4666-4776)
[»] scaffold0354 (1 HSPs)
scaffold0354 (254-311)||(7472-7529)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 19351367 - 19350966
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19351367 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagaatcgagcaatttgtgattatttcact 19351268  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19351267 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatggattgtcta 19351168  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19351167 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 19351068  T
Q  317 aggatcttcacattgattataacgatcaattgttcgtgttaccattgtgtgtttctaagattagcgacacaattataatggtaagcaatcaagaccccta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19351067 aggatcttcacattgattataacgatcaattgttcgtgttaccattgtgtgtttctaagattagcgacacaattataatggtaagcaatcaagaccccta 19350968  T
Q  417 tg 418  Q
    ||    
T  19350967 tg 19350966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 19357681 - 19358001
Alignment:
Q  19 gtgtatgtgagtggatctattaactggttggctattcaaaatattactaa---atataaatggaatgatattagcatcgagcaatttgtgattatttcac 115  Q
    ||||||||||| ||  ||||||||||||||||||||| |||||| ||| |   |||| |||||  ||||||||  || || |||||||||||  | ||||    
T  19357681 gtgtatgtgagaggcactattaactggttggctattcgaaatatgactgatcaatatgaatggcgtgatattacaattgatcaatttgtgatcgtctcac 19357780  T
Q  116 ttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtct 215  Q
    |||||||||  ||||||||||||   |||||  |||||||| | ||||||||||||||||||||| || ||||||  || ||||||||||||||| ||||    
T  19357781 ttgatctggccacggagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatttgtaactgtattgatggatagtct 19357880  T
Q  216 atgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtttt 315  Q
    ||||||||||||| || ||||| |||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||    
T  19357881 atgtttttctcactatttcaaagggacccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagtttt 19357980  T
Q  316 caggatcttcacattgattat 336  Q
    ||||||||||| |||||||||    
T  19357981 caggatcttcaaattgattat 19358001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 19721793 - 19722088
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    |||| |||||||| ||  ||||||||||||||||||||| ||| |  ||| | ||| |||||| |||||||    ||||||||||||| ||| | || ||    
T  19721793 gtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtaattgtctcgct 19721892  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||||||| ||||||||||||||||||| | |||||||||   || ||||||||||||||| |||||||||| || ||||||||||||||||| ||||||    
T  19721893 tgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactgtcta 19721992  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtttt 315  Q
    ||||||||||||| | |  |   |    |||||||||||||| |||||||||||||||||||| | || |||||||||| |||||||||||| ||||||    
T  19721993 tgtttttctcacagttttca---gggttattttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtttt 19722088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 19779374 - 19779693
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    |||| |||||||||||  |||||||||||||| ||||||||||||  ||  ||||| | ||||||||||||   || || |||||| | ||  | |||||    
T  19779374 gtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaattgatcaatttctcatcctctcact 19779473  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||||||  ||| ||||| || ||||| ||   ||||||||  || |||||||| |||||||||||||| ||| | ||||||||||||||||||||||||    
T  19779474 tgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctgttactgtattgatggattgtcta 19779573  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||  |  |||   |||||||||||||||||||  ||||||||| |  |||||| | || |||||||||| ||||||||||||||||||||    
T  19779574 tgtttttctcaccgttccaaggagacccattttgttttatggttgatgatggagtacggagttcaagactcttggactcaattcctcaaaattagttttc 19779673  T
Q  317 aggatcttcacattgattat 336  Q
    |||| ||||| |||||||||    
T  19779674 aggaccttcaaattgattat 19779693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 19888009 - 19887690
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    |||| |||||||||||  |||||||||||||| ||||||||||||  ||  ||||| | ||||||||||||   || || |||||| | ||  | |||||    
T  19888009 gtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaattgatcaatttctcatcctctcact 19887910  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||||||  ||| ||||| || ||||| ||   ||||||||  || |||||||| |||||||||||||| ||| | ||||||||||||||||||||||||    
T  19887909 tgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctgttactgtattgatggattgtcta 19887810  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||  |  |||   |||||||||||||||||||  ||||||||| |  |||||| | || |||||||||| ||||||||||||||||||||    
T  19887809 tgtttttctcaccgttccaaggagacccattttgttttatggttgatgatggagtacggagttcaagactcttggactcaattcctcaaaattagttttc 19887710  T
Q  317 aggatcttcacattgattat 336  Q
    |||| ||||| |||||||||    
T  19887709 aggaccttcaaattgattat 19887690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 19344693 - 19344565
Alignment:
Q  197 ctgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactcc 296  Q
    ||||||||||||| || || |||||||||||||||||||| |  || ||||||||| ||||||||||||||||||||||||||||  | ||||||||||     
T  19344693 ctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T
Q  297 attcctcaaaattagttttcaggatcttc 325  Q
    ||| || ||||||||||||||| ||||||    
T  19344593 atttcttaaaattagttttcagaatcttc 19344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 339
Target Start/End: Complemental strand, 660955 - 660823
Alignment:
Q  207 ggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaa 306  Q
    ||||||||| ||||||| |||| || |||||   || | ||||||| |||||||||||| ||||||| ||||||| ||||||||||||| |||||| |||    
T  660955 ggattgtctttgtttttgtcacgatttcaaacaaactcgttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaa 660856  T
Q  307 attagttttcaggatcttcacattgattataac 339  Q
    ||||||| |||  ||||||| || ||| |||||    
T  660855 attagttatcataatcttcaaatagataataac 660823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 318
Target Start/End: Complemental strand, 19326218 - 19325982
Alignment:
Q  82 gatattagcatcgagcaatttgtgattatttcacttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctg 181  Q
    ||||||| | ||||||||||| ||||||| || |||||||| ||||| ||||||||  | || |||  | | ||||||||| ||| |||||| |||  ||    
T  19326218 gatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgccatatg 19326119  T
Q  182 ttgagccatccgttactgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttga 281  Q
    |||  ||  |  || |||| ||||||||  | || |||||||||||| || |||| || || ||||||||| ||||||| |||  |||||||||||| ||    
T  19326118 ttgcaccgactattgctgtgttgatggaccgcctttgtttttctcactatatcaagagaactcattttgttatatggcatatgtcggaatttggagtaga 19326019  T
Q  282 ggagtcttggactccattcctcaaaattagttttcag 318  Q
      | |||||||||| |||| ||||||| |||||||||    
T  19326018 acaatcttggactcaattcatcaaaatcagttttcag 19325982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 12820014 - 12819905
Alignment:
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    |||||||||||||  ||||| || ||  |||||||| |||||||||||| |||||||||||||||  | || ||||||| |||||| ||||| |||| ||    
T  12820014 tgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagttgtc 12819915  T
Q  317 aggatcttca 326  Q
    || |||||||    
T  12819914 agaatcttca 12819905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 29454173 - 29454092
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    |||||||| |||||| ||||||| ||||||||||||| || |||||||||| |||| | |||||||||| ||| ||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttca 29454092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 22520335 - 22520244
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgatta 335  Q
    ||||||||||||||||| |||||||| ||| ||||||  ||||||||||||||| | ||  ||||||||| | || ||||||| ||||||||    
T  22520335 cattttgttttatggcatatgatggattttagagttgtagagtcttggactccactgcttcaaattagttatgagaatcttcaaattgatta 22520244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 14076677 - 14076759
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| ||| ||||||| |||| ||||||||||||||| || |||||||||| ||| || |||||||||| |||| |||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 14386705 - 14386787
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| ||| ||||||| |||| ||||||||||||||| || |||||||||| ||| || |||||||||| |||| |||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14386787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 16839602 - 16839559
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacata 137  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  16839602 gagcaatttgtgattatttcacttgatttgggcacggagacata 16839559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 19604524 - 19604465
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    |||||||||||| ||||||||||||||| || || ||||||| |||||| ||||||||||    
T  19604524 tatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattat 336  Q
    |||||||| |||||| ||||||| ||||||| | | | || |||||||| | |||||| |||||||||| |||||||||||| || ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 18952981 - 18952907
Alignment:
Q  239 ggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    ||||||||||| |  |||||||||||| |||||||||||||||  |||| |||||||  ||||| ||||||||||    
T  18952981 ggacccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtt 18952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 18983028 - 18982954
Alignment:
Q  239 ggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    ||||||||||| |  |||||||||||| |||||||||||||||  |||| |||||||  ||||| ||||||||||    
T  18983028 ggacccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18982954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 18997674 - 18997600
Alignment:
Q  239 ggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    ||||||||||| |  |||||||||||| |||||||||||||||  |||| |||||||  ||||| ||||||||||    
T  18997674 ggacccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 22070073 - 22070179
Alignment:
Q  207 ggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaa 306  Q
    ||||||||| |||||||||||  || ||||| | || |||||| || ||||||| |||| | ||||||||||| | |||||||||||||  ||  |||||    
T  22070073 ggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaa 22070172  T
Q  307 attagtt 313  Q
    |||||||    
T  22070173 attagtt 22070179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 29874520 - 29874602
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattat 336  Q
    ||||||| |||| | ||||||| ||||| || |||||||||||||| || |||||||||| |||  ||||||| |||||||||    
T  29874520 tatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 22028624 - 22028700
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttca 317  Q
    |||||||||||| ||||| | |||| ||| | ||||||||| ||||||||||||| ||| || || |||||||||||    
T  22028624 acccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttca 22028700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 22080830 - 22080946
Alignment:
Q  207 ggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaa 306  Q
    ||||||||| |||||||||||  || |||||   || |||||| || ||||||| |||| | ||||||||||| | |||||||||||||  ||  |||||    
T  22080830 ggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaa 22080929  T
Q  307 attagttttcaggatct 323  Q
    ||||||| |||| ||||    
T  22080930 attagttatcagaatct 22080946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 9807824 - 9807871
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttgga 292  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||    
T  9807824 atttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 16846685 - 16846642
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacata 137  Q
    |||||||||||||||||||| |||||| |||| |||||||||||    
T  16846685 gagcaatttgtgattatttctcttgatttgggcacggagacata 16846642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 22021388 - 22021455
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaat 308  Q
    |||||||| ||| |||||||||||||||| | ||||||||| || |||||||||| ||| || |||||    
T  22021388 acccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 18326070 - 18326112
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacat 136  Q
    |||||||||| |||||||||||||||| |||| ||||||||||    
T  18326070 gagcaatttgcgattatttcacttgatttgggcacggagacat 18326112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 21218778 - 21218712
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattag 311  Q
    |||| ||| ||||||| |||| ||||||||||| |||  |||||||||||| |||||||||| ||||    
T  21218778 atttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttag 21218712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 22063641 - 22063715
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcag 318  Q
    ||||||||| ||||||| |||| |||||||||| || | |||||||||||||  ||  |||||||||||| ||||    
T  22063641 cattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttatcag 22063715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 22100456 - 22100566
Alignment:
Q  208 gattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaa 307  Q
    |||| ||| |||||||||||  || ||||||  || |||||| || ||||||| |||| | ||||||||||| | |||||||||||||  ||  ||||||    
T  22100456 gattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaa 22100555  T
Q  308 ttagttttcag 318  Q
    |||||| ||||    
T  22100556 ttagttatcag 22100566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 24002201 - 24002283
Alignment:
Q  247 tttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacat 329  Q
    |||||||||||||| |||| ||| |  |||||| | ||||||||||||| ||| || || ||||||| |||| ||||||||||    
T  24002201 tttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttatcagaatcttcacat 24002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 26256775 - 26256825
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactc 295  Q
    ||||||||||||||||||||| ||| | ||||||| | |||||||||||||    
T  26256775 attttgttttatggcagatgaaggagtatggagttcaagagtcttggactc 26256825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 29106814 - 29106864
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactc 295  Q
    |||||||| |||||||||||| | ||||||| ||||| |||||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 19597716 - 19597659
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattag 311  Q
    |||||||||||| |||||||| |||||| ||||| |||||||  || |||||||||||    
T  19597716 tatggcagatgaaggaatttgaagttgaagagtcatggactcagtttctcaaaattag 19597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 22069964 - 22070001
Alignment:
Q  98 aatttgtgattatttcacttgatctgggtacggagaca 135  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22069964 aatttgtgattatttcacttgatttgggtaccgagaca 22070001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 29859454 - 29859535
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    |||| ||| ||||| |||||| | ||||||||||||| || |||||||| ||||| || |||||||||| |||  |||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttca 29859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 1986029 - 1985957
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    |||||||||||| | ||||| |||| ||||||||| ||||| || |||||||||| |||  | ||||||||||    
T  1986029 acccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagtt 1985957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 6864860 - 6864796
Alignment:
Q  262 atgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    |||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| |||  |||||||    
T  6864860 atgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttca 6864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 9807676 - 9807716
Alignment:
Q  97 caatttgtgattatttcacttgatctgggtacggagacata 137  Q
    |||||||||||| ||||||||||| ||||||| ||||||||    
T  9807676 caatttgtgattctttcacttgatttgggtactgagacata 9807716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 14076544 - 14076588
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacatat 138  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||    
T  14076544 gagcaatttgtgattatctcacttgatttggggactgagacatat 14076588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 14386572 - 14386616
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacatat 138  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||    
T  14386572 gagcaatttgtgattatctcacttgatttggggactgagacatat 14386616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 15443966 - 15444014
Alignment:
Q  247 tttgttttatggcagatgatggaatttggagttgaggagtcttggactc 295  Q
    |||||||||||||| |||| ||| | ||||||||| |||||||||||||    
T  15443966 tttgttttatggcatatgaaggagtatggagttgaagagtcttggactc 15444014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 15572005 - 15571897
Alignment:
Q  205 atggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctca 304  Q
    ||||||||||| ||||||||| |  || ||||  | |||||||||||  | ||||| |||| ||| ||||||||||| |||||||||  || |||||  |    
T  15572005 atggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaattccata 15571906  T
Q  305 aaattagtt 313  Q
    |||||||||    
T  15571905 aaattagtt 15571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    |||||||| |||||||||||| | ||||||| ||||| ||||| ||||||| |||  | ||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 18913855 - 18913536
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||| || || ||||||||||||||||||| ||| || |||||||||||  | || ||    
T  18913855 gtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagtctcgct 18913756  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||| ||| ||| |||||||| |||||||| ||||||||| | ||||||||||||| |||||| ||||| || || |||| ||| |||||||||||||||    
T  18913755 tgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagcaccacccgttgaaccgtctgttagtgtgttgatggattgtcta 18913656  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||  | |||   | |||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  18913655 tgtttttctcaccgtttcaggggaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18913556  T
Q  317 aggatcttcacattgattat 336  Q
    |  ||||||| |||||||||    
T  18913555 aaaatcttcatattgattat 18913536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 18909107 - 18908788
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    |||||||||||||||| |||||||||||||||||||||| | |||  ||| ||||| |||||||||||||||  ||| | |||||||||||  | || ||    
T  18909107 gtgtgtatgtgagtggttctattaactggttggctattcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgatagtctcgct 18909008  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||| ||| ||| ||||||||||  || ||  |||||||| | |||||||||||||||||||||||||| || || |||| ||| |||||||||||||||    
T  18909007 tgatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtcta 18908908  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||  | | | |   |||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  18908907 tgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18908808  T
Q  317 aggatcttcacattgattat 336  Q
    |  ||||||| |||||||||    
T  18908807 aaaatcttcatattgattat 18908788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 68 - 336
Target Start/End: Complemental strand, 18921012 - 18920744
Alignment:
Q  68 aatataaatggaatgatattagcatcgagcaatttgtgattatttcacttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgt 167  Q
    ||||| |||||||||||||||  ||| | |||||||||||  | || |||||| ||| ||| ||||||||||  || ||  |||||||| | ||||||||    
T  18921012 aatatgaatggaatgatattactatcaaacaatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgccacctagcggttttgt 18920913  T
Q  168 tgaagtaccacctgttgagccatccgttactgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatg 267  Q
    |||||||||||||||||| || || |||| ||| |||||||||||| ||||||||||||||  | | | |   |||||||||||| ||||| ||||||||    
T  18920912 tgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatg 18920813  T
Q  268 gaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattat 336  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||  ||||||| |||||||||    
T  18920812 gaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattat 18920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 554472 - 554557
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    |||||| || || ||||||| ||||| |||| ||||||| | ||||||||||||| ||| || |||||||||| | ||| ||||||    
T  554472 acccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttatgaggttcttca 554557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 14514923 - 14514968
Alignment:
Q  268 gaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    |||||||||||||| || |||||||||| |||||| ||||||||||    
T  14514923 gaatttggagttgaagattcttggactcaattccttaaaattagtt 14514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 20975557 - 20975605
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttgga 292  Q
    ||||||||| ||||||| |||| ||||||||||||||| || |||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttgga 20975605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 7837 - 8152
Alignment:
Q  21 gtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcacttgat 120  Q
    ||||||||||||  || |||||||||||||||||| |||||| | | ||||| ||||||||||||||   ||| | |||||||||||  | ||||||| |    
T  7837 gtatgtgagtggcactgttaactggttggctattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcgtatcacttgtt 7936  T
Q  121 ctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtctatgtt 220  Q
    |||| ||| ||||||| |   |||||  |||||||    |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  7937 ctggctacagagacatttaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtt 8036  T
Q  221 tttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcagga 320  Q
    ||||||||  | ||||  | ||||||||||||||||||  |||||||||||| |||||| | || ||||||| || ||| ||||||||||||||||||||    
T  8037 tttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcagga 8136  T
Q  321 tcttcacattgattat 336  Q
    |||||| |||||||||    
T  8137 tcttcaaattgattat 8152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 32579163 - 32578844
Alignment:
Q  17 gtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcact 116  Q
    ||||||||||||||||  ||||||| ||||||||||||| |||||  ||| ||||| || |||||||||||   |||||||||||| | ||| | |||||    
T  32579163 gtgtgtatgtgagtggcactattaattggttggctattcgaaataagactgaatatgaaaggaatgatatttcaatcgagcaatttctcattttatcact 32579064  T
Q  117 tgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtcta 216  Q
    |||||||  |||||||||||| | ||| ||  ||||| | |  || ||||||||||||||||| ||||||||| | |||||||| |||||||||||||||    
T  32579063 tgatctgactacggagacataccgacatttgctgccatcgcagggatttgttgaagtaccaccggttgagccagctgttactgtgttgatggattgtcta 32578964  T
Q  217 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 316  Q
    ||||||||||||  | ||||   |||||||||||||||||||  ||||||||| |  |||||| | ||||||||||||| ||||||||| ||||||||||    
T  32578963 tgtttttctcaccgtttcaaggagacccattttgttttatggatgatgatggagtacggagttcacgagtcttggactcaattcctcaagattagttttc 32578864  T
Q  317 aggatcttcacattgattat 336  Q
    |||| ||||| |||||||||    
T  32578863 aggaccttcaaattgattat 32578844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 51 - 336
Target Start/End: Complemental strand, 12735054 - 12734769
Alignment:
Q  51 tattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcacttgatctgggtacggagacatatcaacagtttttg 150  Q
    |||| ||||||| | | ||||| ||||||||||||||    || | |||||||||||  | ||||||| ||||| ||| ||||||| |   ||||| |||    
T  12735054 tattaaaaatatgaatgaatatgaatggaatgatatttcagtcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgttg 12734955  T
Q  151 ccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttg 250  Q
    |||||    |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  | ||||  | ||||||||||    
T  12734954 ccacccaacggttttgttgaaataccacctgttgagccatctgttactgtattgatggatcgtctatgtttttctcaccgtttcaagggaacccattttg 12734855  T
Q  251 ttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattat 336  Q
    ||||||||  |||| ||||||| |||||| | || ||||||| || ||| |||||||||||||||||||||||||| |||||||||    
T  12734854 ttttatggatgatgttggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattat 12734769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 3625743 - 3625815
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||||| |||| | ||||||| ||||| ||||||||||||| ||| || |||||||||| |||  |||||||    
T  3625743 tatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttca 3625815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 14749171 - 14749485
Alignment:
Q  19 gtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagcatcgagcaatttgtgattatttcacttg 118  Q
    ||||||||||||||   ||||||||||||||||||||||||||  ||  ||||| | | ||||||||||   ||||| |||||| | ||| |||||||||    
T  14749171 gtgtatgtgagtggcagtattaactggttggctattcaaaataagaccgaatatgattagaatgatatttcaatcgaccaatttctcattgtttcacttg 14749270  T
Q  119 atctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgttgagccatccgttactgtattgatggattgtctatg 218  Q
    ||||   |||||||||||| |  |  || ||||||||||  || ||||||||||||||| ||||||||||||| |||||  | |||||||||||||||||    
T  14749271 atctaactacggagacataccgtcgtttcttgccacctcagggatttgttgaagtaccatctgttgagccatctgttaccattttgatggattgtctatg 14749370  T
Q  219 tttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcag 318  Q
    ||||||||||  | |||||  |||||||||||||||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||||  |||||    
T  14749371 tttttctcaccgtttcaaagagacccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagccttcag 14749470  T
Q  319 gatcttcacattgat 333  Q
    || ||||| ||||||    
T  14749471 gaccttcaaattgat 14749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 24254544 - 24254426
Alignment:
Q  197 ctgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactcc 296  Q
    |||| |||||||| || || |||||||||||| || |||| || || ||||||||| |||||||||||  |||||||||||| ||  | ||||||||||     
T  24254544 ctgtgttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T
Q  297 attcctcaaaattagtttt 315  Q
    |||| ||||||| ||||||    
T  24254444 attcatcaaaatcagtttt 24254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 6921424 - 6921352
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    |||||||||||| | ||||| |||| ||||||||||||||| || |||||||||| |||||| ||||||||||    
T  6921424 acccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 6947998 - 6947882
Alignment:
Q  197 ctgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactcc 296  Q
    |||| ||||||||||| || |||||||| ||  || |||| |  ||||| |||||| | ||||| |||| ||||||||||||||| || ||||||||||     
T  6947998 ctgtgttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactca 6947899  T
Q  297 attcctcaaaattagtt 313  Q
    |||||| ||||||||||    
T  6947898 attccttaaaattagtt 6947882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 6954637 - 6954518
Alignment:
Q  197 ctgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactcc 296  Q
    |||||||||||||||| || ||||| ||| |  || |||| |  |||||||||||| | ||||| |||| ||||||||||||||| || ||||||||||     
T  6954637 ctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 6954538  T
Q  297 attcctcaaaattagttttc 316  Q
    |||  | |||||||||||||    
T  6954537 attgattaaaattagttttc 6954518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 20770607 - 20770731
Alignment:
Q  202 ttgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcc 301  Q
    |||||||||||| | |||||||||||  || | ||||  ||  |||||||| ||||||| |||| |||||||||| |||| ||||| |||| || |||||    
T  20770607 ttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattcc 20770706  T
Q  302 tcaaaattagttttcaggatcttca 326  Q
    | |||||||||| |||  |||||||    
T  20770707 ttaaaattagttatcataatcttca 20770731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 24950214 - 24950150
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaatt 309  Q
    |||||||| ||||| |||||||| | |||||||||||||||||||||| || |||||| ||||||    
T  24950214 attttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 17369675 - 17369745
Alignment:
Q  256 tggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| |||| ||||||||||||||| || |||||||||| ||| || |||||||||| |||| |||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 17369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 6935292 - 6935220
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    ||||||| |||| | ||||| |||| ||||||||||||| | || |||||||||  |||||| ||||||||||    
T  6935292 acccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 6935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 53774839 - 53774919
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatctt 324  Q
    ||||||||| ||||||| |||| ||||||||||||||| ||||||||||||| |||||| |||||||||| |||| |||||    
T  53774839 cattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 3565744 - 3565825
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| || |||||||||||| ||||||||| ||||| ||||||||||||| ||| || |||||||||| ||| ||||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 3557726 - 3557807
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| || ||||||| |||| ||||||||| ||||| ||||||||||||| ||| || |||||||||| ||| ||||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 11971053 - 11970971
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||||||| ||||||| |||| |||||||||||| || ||||||||||||| ||| || | |||||||| |||  |||||||    
T  11971053 cattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttca 11970971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 11981754 - 11981664
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgatt 334  Q
    ||||||||| ||||||| |||| |||||||||||| || ||||| ||||||| ||| || |||||||||| ||   ||||||| |||||||    
T  11981754 cattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgatt 11981664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 53790513 - 53790634
Alignment:
Q  205 atggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctca 304  Q
    ||||||||| | |||||||||||| || | || || || |||||| || ||||| ||||||   |||||||| ||||  | |||||||||| ||| || |    
T  53790513 atggattgtttgtgtttttctcactatgttaagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttctta 53790612  T
Q  305 aaattagttttcaggatcttca 326  Q
    |||||||||||||| |||||||    
T  53790613 aaattagttttcagaatcttca 53790634  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 3561017 - 3560947
Alignment:
Q  256 tggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||||||||   ||||||| ||||| ||||||||||||| ||| || |||||||||| ||| ||||||||    
T  3561017 tggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3560947  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 1686346 - 1686305
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactc 295  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    
T  1686346 tatggcagatgaaggaatttggcgttgacgagtcttggactc 1686305  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 29647633 - 29647748
Alignment:
Q  202 ttgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcc 301  Q
    ||||||||||| || |||||||||||| |||| || |  || ||||||||| ||||||| ||||| ||||||||| ||||  | |||||||||| |||||    
T  29647633 ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattcc 29647732  T
Q  302 tcaaaattagttttca 317  Q
    | ||||||||||||||    
T  29647733 ttaaaattagttttca 29647748  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 28763979 - 28763888
Alignment:
Q  241 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattga 332  Q
    |||||||||||| ||||| |||||| | |||||||||||||  ||||||||| || |||||||||||| || | |||||||||||| |||||    
T  28763979 acccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttcaaattga 28763888  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 29597623 - 29597550
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttca 317  Q
    ||||||||| ||||||| ||||| ||||||||||||||  | |||||||||| |||||| ||||||||||||||    
T  29597623 cattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttca 29597550  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 29642358 - 29642437
Alignment:
Q  244 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatct 323  Q
    ||||| ||| ||||||| ||||| ||||||||| ||||  | |||||||||| |||||| ||||||||||||||| ||||    
T  29642358 catttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcagaatct 29642437  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 18964891 - 18964819
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||||| |||| ||||||||||||||| || |||||||||| ||| || |||||| ||| |||| |||||||    
T  18964891 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 18964819  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 18965054 - 18965012
Alignment:
Q  94 gagcaatttgtgattatttcacttgatctgggtacggagacat 136  Q
    ||||||||||||||||| |||||||||||||| | ||||||||    
T  18965054 gagcaatttgtgattatctcacttgatctggggatggagacat 18965012  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 23086784 - 23086832
Alignment:
Q  247 tttgttttatggcagatgatggaatttggagttgaggagtcttggactc 295  Q
    |||||| |||||||||||| ||| ||||||||| | |||||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactc 23086832  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 4366565 - 4366475
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgatta 335  Q
    ||||||||||||||||||||| | |||| || ||||| ||||||||||||||||| || ||| ||||||  ||| ||||||| || |||||    
T  4366565 attttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 39379131 - 39379050
Alignment:
Q  245 attttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 326  Q
    ||||| || |||||||||||| ||||||||| ||||| ||||||||||||| ||| || ||||| |||| ||| ||||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttca 39379050  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 4015032 - 4014967
Alignment:
Q  248 ttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 313  Q
    ||||| |||||||||||| | ||||||| ||||| || |||||||||| |||||| ||| ||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtt 4014967  T

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Target: scaffold0867 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 4776 - 4666
Alignment:
Q  208 gattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaa 307  Q
    |||| ||| |||||||||||  || ||||||  || |||||| || ||||||| |||| | ||||||||||| | |||||||||||||  ||  ||||||    
T  4776 gattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaa 4677  T
Q  308 ttagttttcag 318  Q
    |||||| ||||    
T  4676 ttagttatcag 4666  T

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Target: scaffold0354 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 7472 - 7529
Alignment:
Q  254 tatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattag 311  Q
    ||||||| |||| ||||||||||||||| |||||||||  || |||||| ||||||||    
T  7472 tatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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