View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_18 (Length: 419)

Name: NF2218_low_18
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_18
NF2218_low_18
[»] chr2 (21 HSPs)
chr2 (183-412)||(35348092-35348319)
chr2 (181-412)||(35343400-35343628)
chr2 (189-412)||(35355655-35355876)
chr2 (22-119)||(35347941-35348038)
chr2 (256-404)||(35371569-35371708)
chr2 (237-412)||(35346048-35346220)
chr2 (22-119)||(35368412-35368511)
chr2 (256-412)||(35374345-35374492)
chr2 (33-94)||(35374591-35374652)
chr2 (22-119)||(35343263-35343360)
chr2 (33-94)||(35355963-35356024)
chr2 (29-97)||(35371801-35371869)
chr2 (29-88)||(35364633-35364692)
chr2 (29-119)||(35335795-35335885)
chr2 (323-369)||(35364350-35364396)
chr2 (258-369)||(35368225-35368333)
chr2 (256-369)||(35335586-35335699)
chr2 (200-272)||(35351227-35351299)
chr2 (201-272)||(35340805-35340876)
chr2 (23-94)||(35351400-35351471)
chr2 (29-91)||(35346336-35346400)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 183 - 412
Target Start/End: Original strand, 35348092 - 35348319
Alignment:
Q  183 cttagcatatcgtatatctaattccattttcttcttttcaacatacacttttta-catagccagcgttaaaacaaaaatggcatccatttctttggccat 281  Q
    ||||||||||| |||| ||||||||||||||||||||  |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||    
T  35348092 cttagcatatcatataactaattccattttcttctttataacatacattttttaacatagccagcgtaaaaacaaaaatggcatccatttctttggctat 35348191  T
Q  282 tactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgga 381  Q
    |||||||||||||||||| ||||||||  |||||||||||   ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  35348192 tactccaaagtgcaagcatcatggatacagtgaaggtaac---ggtgattggtttggttatacaagtgtatcttgcattaaagaagataatcgcaatgga 35348288  T
Q  382 gatcgagactcatgcaaggaaggtgatgatg 412  Q
    |||||||||||||||||||||||||||||||    
T  35348289 gatcgagactcatgcaaggaaggtgatgatg 35348319  T

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Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 181 - 412
Target Start/End: Original strand, 35343400 - 35343628
Alignment:
Q  181 atcttagcatatcgtatatctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggcca 280  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  35343400 atcttagcatatcatataactaattccattttcttctttttaacatacacttttcacatagccagcgtaaaaaccaaaatggcatccatttctttggcca 35343499  T
Q  281 ttactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgg 380  Q
    ||| |||||||||| |||||||||||||||||||||||   |||||||||||| || ||||||||||||||||||||||||||||| || ||| ||||||    
T  35343500 ttattccaaagtgcgagcagcatggatatggtgaaggt---aacggtgattggattagttatacatgtgtatcttgcattgaagaaaattatcacaatgg 35343596  T
Q  381 agatcgagactcatgcaaggaaggtgatgatg 412  Q
    |||||||||||||||||| ||||| |||||||    
T  35343597 agatcgagactcatgcaaagaaggcgatgatg 35343628  T

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Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 189 - 412
Target Start/End: Complemental strand, 35355876 - 35355655
Alignment:
Q  189 atatcgtatatctaattccattttcttcttttc-aacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggccattactcc 287  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||||||||    
T  35355876 atatcatataactaattccattttcttcttttccaacatacactttttacatagcaagcgtcaaaaccaaaatggcatcaatttctatggccattactcc 35355777  T
Q  288 aaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcga 387  Q
    |||||||||| |||||||||||| |||||||   || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  35355776 aaagtgcaaggagcatggatatgatgaaggt---aatggtgattggtttggttatacatatgtatcttgcattgaagaagattatcgcaatggagatcga 35355680  T
Q  388 gactcatgcaaggaaggtgatgatg 412  Q
    ||||| | || |||||| |||||||    
T  35355679 gactcttacatggaaggcgatgatg 35355655  T

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Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 35347941 - 35348038
Alignment:
Q  22 ggcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactcaactacttctcttcttgatatatat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||| |||||||    
T  35347941 ggcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtttgcttgtgttagaactactcaacaacttctcttcttgttatatat 35348038  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 256 - 404
Target Start/End: Complemental strand, 35371708 - 35371569
Alignment:
Q  256 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt 355  Q
    ||||||||||||||||   ||| |||| ||| |||||||||||| |||| |||||||||||||||         |||||||| ||||||| |||||||||    
T  35371708 aaaatggcatccattttgatggtcattgctctaaagtgcaagcaacatgtatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt 35371618  T
Q  356 gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaagg 404  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  35371617 gcattgaagaagattaccgcaatggagatcgagactcatgcaaggaagg 35371569  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 412
Target Start/End: Complemental strand, 35346220 - 35346048
Alignment:
Q  237 catagccagcgttaaaacaaaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggttt 336  Q
    |||||||||| | ||||| ||||||||||||||||    || |||| |||||  |||||||||| ||| || |||||||||   ||||||||||||||||    
T  35346220 catagccagcttcaaaactaaaatggcatccattttcacggtcattgctccattgtgcaagcagaatgcatgtggtgaagg---caacggtgattggttt 35346124  T
Q  337 ggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg 412  Q
    |||||||||| ||||||||| |||| ||||||| |||||||||| |||| ||| || | ||||||||| |||||||    
T  35346123 ggttatacatctgtatcttgtattgtagaagattatcgcaatggggatcaagattcttacaaggaaggcgatgatg 35346048  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 35368511 - 35368412
Alignment:
Q  22 ggcacgtagccatgctcatacctt-aagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaact-caactacttctcttcttgatatatat 119  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||| |||||||||| |||| |||| |||||| | |||||||    
T  35368511 ggcacgtagccatgctcattcctttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactccaacaacttatcttctagttatatat 35368412  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 412
Target Start/End: Complemental strand, 35374492 - 35374345
Alignment:
Q  256 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt 355  Q
    |||||||||||||||||  ||| |||| ||| ||| |||||||| |||| |||||||||||||||         |||||||| ||||||| |||||||||    
T  35374492 aaaatggcatccatttccatggtcattgctctaaactgcaagcaacatgcatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt 35374402  T
Q  356 gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg 412  Q
    |||||||||||||| |||  || ||||| ||||| || | | |||||||||||||||    
T  35374401 gcattgaagaagattatcataacggagaccgagattcttaccaggaaggtgatgatg 35374345  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 35374652 - 35374591
Alignment:
Q  33 atgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactc 94  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  35374652 atgctcacaccttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactc 35374591  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 35343263 - 35343360
Alignment:
Q  22 ggcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactcaactacttctcttcttgatatatat 119  Q
    |||||||||| | ||||| |||||||| |||| ||||||||||||||||||| |  ||||||| ||| |||||||| | ||||||||| | |||||||    
T  35343263 ggcacgtagcaaagctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaataactcaacaagttctcttctagttatatat 35343360  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 35356024 - 35355963
Alignment:
Q  33 atgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactc 94  Q
    ||||||| ||||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  35356024 atgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtgttagaacaactc 35355963  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 35371869 - 35371801
Alignment:
Q  29 agccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactcaac 97  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||| | || ||||||||    
T  35371869 agccatgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtggcacaataactcaac 35371801  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 35364692 - 35364633
Alignment:
Q  29 agccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaa 88  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||| ||||    
T  35364692 agccatgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtggaagaa 35364633  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 35335885 - 35335795
Alignment:
Q  29 agccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactcaactacttctcttcttgatatatat 119  Q
    ||||||||||| |||||||||||||  ||||||||| || ||||| |||||||| ||||||| ||||||  ||| |||||| | |||||||    
T  35335885 agccatgctcacaccttaagcaaacacacacacttcctgcgtggtttgcttgtgctagaacagctcaacagcttttcttctagttatatat 35335795  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 35364396 - 35364350
Alignment:
Q  323 acggtgattggtttggttatacatgtgtatcttgcattgaagaagat 369  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  35364396 acggtgattggttcggttatacgtgtgtatcttgcattgaagaagat 35364350  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 369
Target Start/End: Complemental strand, 35368333 - 35368225
Alignment:
Q  258 aatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgc 357  Q
    ||||| || ||||||  ||| |||| ||| ||| ||||||||||||| ||||||||||||| |    | |||||||||||||| ||||| |||||||||     
T  35368333 aatggtattcatttccatggtcattgctctaaactgcaagcagcatgcatatggtgaaggtgaa---gttgattggtttggttgtacatctgtatcttgt 35368237  T
Q  358 attgaagaagat 369  Q
    ||||||||||||    
T  35368236 attgaagaagat 35368225  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 369
Target Start/End: Complemental strand, 35335699 - 35335586
Alignment:
Q  256 aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggat---atggtgaaggtaacaacggtgattggtttggttatacatgtgtat 352  Q
    |||||||||||||||||  ||| |||| |||||||||||||||| |||| ||   | ||||||||   | || |||||||||||||||| |||  | |||    
T  35335699 aaaatggcatccatttccatggtcattgctccaaagtgcaagcaacatgcatttaacggtgaagg---cgactgtgattggtttggttacacaaatatat 35335603  T
Q  353 cttgcattgaagaagat 369  Q
    |||||||||||||||||    
T  35335602 cttgcattgaagaagat 35335586  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 35351299 - 35351227
Alignment:
Q  200 ctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc 272  Q
    ||||||||||||||||||||| || | | |||||| |||||  |||||| ||||| |||||||||||||||||    
T  35351299 ctaattccattttcttcttttaaatacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttc 35351227  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 35340876 - 35340805
Alignment:
Q  201 taattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc 272  Q
    |||||||||||||||||||| | || |||||||| ||||||||| | | | ||| |||||| ||||||||||    
T  35340876 taattccattttcttcttttaatcacacacttttaacatagccaacctcacaaccaaaatgacatccatttc 35340805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 35351471 - 35351400
Alignment:
Q  23 gcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtctgcttgtggtagaacaactc 94  Q
    ||||||||||||||||| ||||| ||||||  |||||||||| ||  |||| |||||||| ||| |||||||    
T  35351471 gcacgtagccatgctcacacctttagcaaagatacacacttcctgcatggtttgcttgtgttaggacaactc 35351400  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 35346400 - 35346336
Alignment:
Q  29 agccatgctcataccttaagcaaacttacacac--ttcttgtgtggtctgcttgtggtagaacaa 91  Q
    ||||||||||| |||||||||||||  ||||||  |||||||||||| | |||||| ||||||||    
T  35346400 agccatgctcacaccttaagcaaacacacacacacttcttgtgtggtttacttgtgatagaacaa 35346336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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