View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_2 (Length: 603)
Name: NF2218_low_2
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 159 - 591
Target Start/End: Complemental strand, 9797280 - 9796843
Alignment:
| Q |
159 |
ttatacttaaggggaaataaatatat----tttaagggcttatatagttaggggccgagggagtattaatagagaaatatttatgtagtgattggtattg |
254 |
Q |
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| T |
9797280 |
ttatacttaaggggaaataaatatatatattttaagggcttata--gttaggggccgagggagtattaatagagaaatatttatgtagtgattggtatta |
9797183 |
T |
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| Q |
255 |
atatatagaatctagatcatagattccaagaagatgatgatg---taggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaaca |
351 |
Q |
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| T |
9797182 |
atatatagaatatagatcatagattccaacaagatgatgatgatgtaggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaaca |
9797083 |
T |
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| Q |
352 |
aatggaagcacaagaagccacatgtctttcccttaatctctctttcaagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatat |
451 |
Q |
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| T |
9797082 |
aatggaagcacaagaagccacatgtctttcccttaatctctctttcaagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatat |
9796983 |
T |
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| Q |
452 |
tttaccacttcttaacgctctcccctttttctctcctcctcttagctttttgattcattattcttcactactttgccatcatcatgtgttttcatcaata |
551 |
Q |
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| T |
9796982 |
tttaccacttcttaacgctctcccctttttctctcctcctcttagctttttgattcattattcttcactactttgccatcatcatgtgttttcatcaata |
9796883 |
T |
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| Q |
552 |
tctcctaacccaaacaactacctacacatttttcaatatt |
591 |
Q |
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| T |
9796882 |
tctcctaacccaaacaactacctacacatttttcaatatt |
9796843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 9797376 - 9797303
Alignment:
| Q |
38 |
aaaataataatacaaaacttttcttcatttatgtatagttggtaatcttataagttagtaatattaataaaagg |
111 |
Q |
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| T |
9797376 |
aaaataataatacaaaacttttcttcatttgtgtatagttggtaatcttataagttagtaatattaataaaagg |
9797303 |
T |
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