View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_21 (Length: 383)
Name: NF2218_low_21
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 92 - 346
Target Start/End: Original strand, 38441067 - 38441336
Alignment:
| Q |
92 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttcatcattttataaaagtagaac---------------caatgatatctggtttgatttg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
38441067 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttcatcattttttaaaagtagaaccaaactaaactgaaccaatgatatctggtttgatttg |
38441166 |
T |
|
| Q |
177 |
gttcggttgattgattcacatgatgcaataaaaaatgtaattttcataactagaaagtagaaactctcattttcaatttattgaacactctgtttagtac |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
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| T |
38441167 |
gttcggttgattgattcacatgatgcaataaaaaatgtaattttcataactagaaaatagaaactctcattttcaatttattgaacactttctttagtac |
38441266 |
T |
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| Q |
277 |
catatctttcttcttaacatgacatcctgctttactacctcaaccttccaacccatcccttgccgttgag |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38441267 |
catatctttcttcttaacatgacatcttgctttactacctcaaccttccaacccatcccttgccgttgag |
38441336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 38440896 - 38440978
Alignment:
| Q |
1 |
tcattttggggcgcagttatggatgataagaaagtggggtagaaaataatgaatttgacaaaggaggataaagggtcgccaaa |
83 |
Q |
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| T |
38440896 |
tcattttggggcgcagttatggatgataagaaagtggggtagaaaataaagaatttgacaaaggaggataaagggtcgccaaa |
38440978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 38449543 - 38449689
Alignment:
| Q |
152 |
aaccaatgatatctggtttgatttggttcggttgattgattcacatgatgcaataaaa--aatgtaattttcataactagaaagtagaaactctcatttt |
249 |
Q |
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|||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
38449543 |
aaccaatgatatatggtttgatttggtctgattggttgattcacatgatgcaataaaaaaaatgtaattttcatagttagaaagtagaaactctcatttt |
38449642 |
T |
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| Q |
250 |
caatttattgaacactctgtttagtaccatatctttcttcttaacatg |
297 |
Q |
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||||| ||| |||||||| | ||||||| ||||| |||||||||||| |
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| T |
38449643 |
caattcattcaacactct-tatagtaccctatctgccttcttaacatg |
38449689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 26031439 - 26031312
Alignment:
| Q |
207 |
aaaaatgtaattttcataactagaaagtagaaactctcattttcaatttattgaacactctgtttagtaccatatctttcttcttaacatgacatcctgc |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||| |||||| | ||||| ||||||||||||||||||||| |
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| T |
26031439 |
aaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaattc-ttcaacactctcgttagtaacctatctgccttcttaacatgacatcctgc |
26031341 |
T |
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| Q |
307 |
tttactacctcaaccttccaacccatccc |
335 |
Q |
| |
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|| ||| |||||||||||||||||||||| |
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| T |
26031340 |
ttcacttcctcaaccttccaacccatccc |
26031312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 26036233 - 26036129
Alignment:
| Q |
232 |
agtagaaactctcattttcaatttattgaacactctgtttagtaccatatctttcttcttaacatgacatcctgctttactacctcaaccttccaaccca |
331 |
Q |
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||||||||||| |||||||||||| || |||||||| |||||||| ||||| |||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
26036233 |
agtagaaactcacattttcaattt-ttcaacactctcgttagtaccttatctgccttcttaacatggcatcctgcttcatttcctcaaccttccaaccca |
26036135 |
T |
|
| Q |
332 |
tccctt |
337 |
Q |
| |
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|||||| |
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|
| T |
26036134 |
tccctt |
26036129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 38449468 - 38449509
Alignment:
| Q |
92 |
aaaccgacaaaatctacatcagttcggtttgcttttgttttc |
133 |
Q |
| |
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||||||||||||||| ||||||||| || ||||||||||||| |
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| T |
38449468 |
aaaccgacaaaatctccatcagttcagtctgcttttgttttc |
38449509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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