View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_28 (Length: 319)

Name: NF2218_low_28
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_28
NF2218_low_28
[»] chr5 (1 HSPs)
chr5 (11-302)||(14244436-14244727)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 14244727 - 14244436
Alignment:
Q  11 gtgagatgaaccaatcctgatgaaccagaggacattgcatgaaaagaagatcagttgactccatgtctttgaagcaaagagggaagattgtgtcaagtgc 110  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14244727 gtgacatgaaccaagcctgatgaaccagaggacattgcatgaaaagaagatcagttgactccatgtcttggaagcaaagagggaagattgtgtcaagtgc 14244628  T
Q  111 tacaaccctcctacacaagtttcctctcgttggaatgannnnnnnngccagtctccaaacgaaatttctaactctaggtaagtgaatacaccaaatcttc 210  Q
    |||| |||||||||||||||||||||||||||||||||        |||| |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  14244627 tacatccctcctacacaagtttcctctcgttggaatgattttttttgccaatctccaaatgaaatttctaactctaggtaagtgaatagaccaaatcttc 14244528  T
Q  211 ttccaaatattaccgagagagggagatgaatattctgggagttgggacacctttgtcattagtcattactcagaagatggtaggcagatttt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14244527 ttccaaatattaccgagagagggagatgaatattctgggagttgggacacctttgtcattagtcattactcagaagatggtaggcagatttt 14244436  T

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