View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_30 (Length: 316)
Name: NF2218_low_30
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_30 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 23965412 - 23965107
Alignment:
| Q |
11 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965412 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaaatttatttccatgttttcattaactttattgtcaatattaacatcaatatata |
23965313 |
T |
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| Q |
111 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacnnnnnnnnatacacagattgatctacctgggtacatgct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23965312 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaatttttttttatacacagattgatctacctgggtacatgct |
23965213 |
T |
|
| Q |
211 |
tcaattctgtctggctactgataaacatgaccataacttacaatttttaatcttcatggtcattattttctacattttttatataatactcaaattatat |
310 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965212 |
tcaattttgtctggctactgataaacatgaccataacttgcaatttttaatcttcatggtcattattttctacattttttatataatactcaaattatat |
23965113 |
T |
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| Q |
311 |
tttggc |
316 |
Q |
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|||||| |
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| T |
23965112 |
tttggc |
23965107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 130116 - 130421
Alignment:
| Q |
11 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130116 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
130215 |
T |
|
| Q |
111 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacnnnnnnnnatacacagattgatctacctgggtacatgct |
210 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |
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| T |
130216 |
tgactgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacttttttttatacacagattgatctacctcggtacattct |
130315 |
T |
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| Q |
211 |
tcaattctgtctggctactgataaacatgaccataacttacaatttttaatcttcatggtcattattttctacattttttatataatactcaaattatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
130316 |
tcaattctgtctggctactgataaacatgaccataactagcaacttttaattttcatggtaattattttctacattttatatataatactcaaattatat |
130415 |
T |
|
| Q |
311 |
tttggc |
316 |
Q |
| |
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|||||| |
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| T |
130416 |
tttggc |
130421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 33547452 - 33547768
Alignment:
| Q |
11 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatca------- |
103 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33547452 |
cacaaatgtggtttacaaagaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
33547551 |
T |
|
| Q |
104 |
---atatatatgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaac--nnnnnnnnatacacagattgatctacc |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
33547552 |
tatatatatatgactgtttgtatcataacaaaaaatttc-ttttaatatcatgaagttttcaaattgtaacttttttttttatacacagattgatcaacc |
33547650 |
T |
|
| Q |
199 |
tgggtacatgcttcaattctgtctggctactgataaacatgaccataacttacaatttttaatcttcatggtcattattttctacattttttatataata |
298 |
Q |
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| |||||||||||||||||| | ||||||||||| ||||||| |||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
33547651 |
tcggtacatgcttcaattctttttggctactgatgaacatgagcataacttgcaattttcaattttcatggtaattattttctacattttatatataata |
33547750 |
T |
|
| Q |
299 |
ctcaaattatattttggc |
316 |
Q |
| |
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|||||||||||||||||| |
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| T |
33547751 |
ctcaaattatattttggc |
33547768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 104 - 316
Target Start/End: Original strand, 26228023 - 26228237
Alignment:
| Q |
104 |
atatatatgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacnnnnnnnn---atacacagattgatctacctg |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26228023 |
atatatatgactgtttgtatcataacaaaaaatttc-ttttaatatcattaagttttcaaattgtaactttttttttttatacacagattgatcaaccct |
26228121 |
T |
|
| Q |
201 |
ggtacatgcttcaattctgtctggctactgataaacatgaccataacttacaatttttaatcttcatggtcattattttctacattttttatataatact |
300 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
26228122 |
ggtacatgcttcaattctttctggctactgatgaacatgagcataacttgcaattttcaattttcatggtaattattttctacattttatatataatact |
26228221 |
T |
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| Q |
301 |
caaattatattttggc |
316 |
Q |
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|||||||||||||||| |
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| T |
26228222 |
caaattatattttggc |
26228237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 26227886 - 26227986
Alignment:
| Q |
11 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26227886 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
26227985 |
T |
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| Q |
111 |
t |
111 |
Q |
| |
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| |
|
|
| T |
26227986 |
t |
26227986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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