View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_36 (Length: 281)

Name: NF2218_low_36
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_36
NF2218_low_36
[»] chr4 (1 HSPs)
chr4 (1-118)||(39292088-39292209)
[»] chr1 (4 HSPs)
chr1 (221-262)||(22388203-22388244)
chr1 (220-262)||(18091194-18091236)
chr1 (221-262)||(41573297-41573338)
chr1 (221-262)||(43840353-43840394)
[»] chr8 (3 HSPs)
chr8 (220-262)||(7553670-7553712)
chr8 (220-262)||(26886070-26886112)
chr8 (226-262)||(33482177-33482213)
[»] chr7 (2 HSPs)
chr7 (220-262)||(20762831-20762873)
chr7 (221-261)||(35222916-35222956)
[»] chr3 (2 HSPs)
chr3 (221-262)||(7827500-7827541)
chr3 (221-262)||(7829888-7829929)
[»] scaffold0143 (1 HSPs)
scaffold0143 (226-262)||(4463-4499)
[»] chr5 (1 HSPs)
chr5 (222-262)||(40445976-40446016)
[»] chr2 (1 HSPs)
chr2 (222-262)||(29896322-29896362)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 39292088 - 39292209
Alignment:
Q  1 gggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtcatta----attaattaatacatctttatgtgtaaactttcaagatttgagtaa 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  39292088 gggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtcattaattaattaattaatacatctttatgtgtaaactttgaagatatgagtaa 39292187  T
Q  97 ttgagattcatttaaaacatta 118  Q
    ||||||||||||||||||||||    
T  39292188 ttgagattcatttaaaacatta 39292209  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 22388244 - 22388203
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  22388244 ttgtcctcgtaagtttaacttagttgatagggacaatgcata 22388203  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 18091194 - 18091236
Alignment:
Q  220 tttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||| |||| | |||||||||||||||||||||    
T  18091194 tttgtcctcgtgagcttaactcagttgatagggacaatgcata 18091236  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 41573338 - 41573297
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||||||| | ||||| |||||||||||||||    
T  41573338 ttgtcctcgtgagtttaactcagttggtagggacaatgcata 41573297  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 43840394 - 43840353
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  43840394 ttgtcctcgtgagtttaactcagttgatatggacaatgcata 43840353  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 7553670 - 7553712
Alignment:
Q  220 tttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||||||||| | ||||| |||||||||||||||    
T  7553670 tttgtcctcgtgagtttaactcagttggtagggacaatgcata 7553712  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 26886112 - 26886070
Alignment:
Q  220 tttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||||||||| ||||||| || ||||||||||||    
T  26886112 tttgtcctcgtgagtttaacttagttggtatggacaatgcata 26886070  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 33482213 - 33482177
Alignment:
Q  226 ctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||  |||||||||||||||||||||||    
T  33482213 ctcgtgagtttagcttagttgatagggacaatgcata 33482177  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 20762831 - 20762873
Alignment:
Q  220 tttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||||||| || |||||||||| ||||||||||    
T  20762831 tttgtcctcgtgagtttagttcagttgataggaacaatgcata 20762873  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 35222916 - 35222956
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcat 261  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  35222916 ttgtcctcgtgagtttaggtcagttgatagggacaatgcat 35222956  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 7827500 - 7827541
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  7827500 ttgtcctcgtgagtttaactcagttgatatggacaatgcata 7827541  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 7829888 - 7829929
Alignment:
Q  221 ttgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  7829888 ttgtcctcgtgagtttaactcagttgatatggacaatgcata 7829929  T

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Target: scaffold0143 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 4463 - 4499
Alignment:
Q  226 ctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||  |||||||||||||||||||||||    
T  4463 ctcgtgagtttagcttagttgatagggacaatgcata 4499  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 40445976 - 40446016
Alignment:
Q  222 tgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||||||| | |||||||| ||||||||||||    
T  40445976 tgtcctcgtgagtttaactcagttgataaggacaatgcata 40446016  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 29896362 - 29896322
Alignment:
Q  222 tgtcctcgtgagtttaatttagttgatagggacaatgcata 262  Q
    ||||||||||||||||||| |||||||||  ||||||||||    
T  29896362 tgtcctcgtgagtttaattcagttgatagaaacaatgcata 29896322  T

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