View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_38 (Length: 275)

Name: NF2218_low_38
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_38
NF2218_low_38
[»] chr8 (11 HSPs)
chr8 (11-259)||(19467413-19467666)
chr8 (11-259)||(19565094-19565347)
chr8 (134-199)||(18847245-18847309)
chr8 (134-203)||(13109678-13109749)
chr8 (81-200)||(33053638-33053756)
chr8 (134-238)||(20253496-20253599)
chr8 (132-203)||(22455326-22455396)
chr8 (116-203)||(5527810-5527897)
chr8 (158-203)||(5892429-5892473)
chr8 (147-187)||(11030459-11030499)
chr8 (130-170)||(30913258-30913298)
[»] chr2 (12 HSPs)
chr2 (88-233)||(25473220-25473366)
chr2 (125-203)||(19011868-19011945)
chr2 (132-203)||(17162220-17162290)
chr2 (150-200)||(12605451-12605501)
chr2 (83-189)||(21770769-21770874)
chr2 (137-203)||(31000119-31000184)
chr2 (132-203)||(13370191-13370261)
chr2 (132-203)||(20515766-20515836)
chr2 (132-209)||(15438253-15438330)
chr2 (138-199)||(21498324-21498384)
chr2 (136-203)||(16467519-16467587)
chr2 (130-162)||(31483288-31483320)
[»] chr7 (7 HSPs)
chr7 (81-236)||(17914328-17914480)
chr7 (125-212)||(14628988-14629074)
chr7 (145-203)||(12468750-12468808)
chr7 (132-202)||(18046281-18046350)
chr7 (130-203)||(4587729-4587801)
chr7 (145-202)||(9022764-9022820)
chr7 (81-149)||(4093948-4094015)
[»] chr3 (17 HSPs)
chr3 (125-236)||(8264176-8264286)
chr3 (132-202)||(14132310-14132379)
chr3 (130-203)||(1085526-1085598)
chr3 (134-203)||(15987391-15987459)
chr3 (136-203)||(9013971-9014042)
chr3 (106-200)||(19112540-19112633)
chr3 (132-177)||(27304674-27304719)
chr3 (136-200)||(19116091-19116154)
chr3 (81-160)||(39583974-39584053)
chr3 (132-203)||(4022952-4023022)
chr3 (81-236)||(20168964-20169120)
chr3 (132-203)||(48895855-48895925)
chr3 (137-203)||(9101867-9101933)
chr3 (91-161)||(20623067-20623136)
chr3 (134-203)||(1744900-1744968)
chr3 (132-177)||(26013662-26013707)
chr3 (134-203)||(53589335-53589404)
[»] chr4 (11 HSPs)
chr4 (81-224)||(5628015-5628156)
chr4 (86-236)||(24332700-24332849)
chr4 (91-207)||(49300431-49300546)
chr4 (136-203)||(6244146-6244212)
chr4 (130-258)||(10398661-10398788)
chr4 (136-209)||(26654323-26654395)
chr4 (130-203)||(24476115-24476187)
chr4 (172-248)||(4635932-4636008)
chr4 (81-200)||(42454556-42454674)
chr4 (137-203)||(14540380-14540445)
chr4 (136-200)||(41635611-41635674)
[»] chr5 (11 HSPs)
chr5 (125-211)||(21166391-21166476)
chr5 (132-203)||(22987545-22987615)
chr5 (124-211)||(21171012-21171095)
chr5 (132-203)||(28619464-28619534)
chr5 (136-203)||(10235868-10235934)
chr5 (82-200)||(24114561-24114677)
chr5 (132-177)||(19924257-19924302)
chr5 (136-185)||(22847845-22847893)
chr5 (147-203)||(22849415-22849470)
chr5 (132-203)||(24364387-24364459)
chr5 (124-200)||(39838751-39838827)
[»] chr6 (6 HSPs)
chr6 (130-198)||(22259443-22259510)
chr6 (130-203)||(6038779-6038851)
chr6 (81-203)||(3634199-3634320)
chr6 (136-200)||(28712196-28712259)
chr6 (130-200)||(16434164-16434233)
chr6 (136-169)||(16142374-16142407)
[»] chr1 (4 HSPs)
chr1 (136-207)||(28623239-28623310)
chr1 (125-170)||(11110452-11110497)
chr1 (132-170)||(17615084-17615122)
chr1 (132-177)||(33102858-33102903)
[»] scaffold0167 (1 HSPs)
scaffold0167 (138-197)||(731-789)
[»] scaffold0039 (1 HSPs)
scaffold0039 (132-202)||(33462-33531)
[»] scaffold0608 (1 HSPs)
scaffold0608 (125-170)||(5889-5934)
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-176)||(39159-39204)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 19467413 - 19467666
Alignment:
Q  11 cacagatataccagatttcaatttt-ttatatcaacttttcttgtctatggatttaataagaccatctacctgtttatcggtgtttttggtaaacaaaac 109  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||    
T  19467413 cacagataaaccagattccattttttttatatcaacttttcttgtctatggatttaacaagaccatctaactttttaccggtgtttttggtaaacaaaac 19467512  T
Q  110 gttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcca----aaaaatgtttgaatgttcatcatgt 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||    
T  19467513 gctagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgttattccaaattaaaaatgtttgaatgttcatcatgt 19467612  T
Q  206 tcttgagattaaacatgaagaagatgaagattattgccttgttcaacaaaatcc 259  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  19467613 tcttgagattaaacatgaagaagatgaagattgttgtcttgttcaacaaaatcc 19467666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 19565094 - 19565347
Alignment:
Q  11 cacagatataccagatttcaatttt-ttatatcaacttttcttgtctatggatttaataagaccatctacctgtttatcggtgtttttggtaaacaaaac 109  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||    
T  19565094 cacagataaaccagattccattttttttatatcaacttttcttgtctatggatttaacaagaccatctaactttttaccggtgtttttggtaaacaaaac 19565193  T
Q  110 gttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcca----aaaaatgtttgaatgttcatcatgt 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||    
T  19565194 gctagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgttattccaaattaaaaatgtttgaatgttcatcatgt 19565293  T
Q  206 tcttgagattaaacatgaagaagatgaagattattgccttgttcaacaaaatcc 259  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  19565294 tcttgagattaaacatgaagaagatgaagattgttgtcttgttcaacaaaatcc 19565347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 18847245 - 18847309
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttca 199  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||   ||||||||||    
T  18847245 aggatcaaactagaaatcctatgacatgttgtgcaa-tctttttccaaaaaatacatgaatgttca 18847309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 13109678 - 13109749
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaattgtttttcc--aaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||| |||||||||||| |||||||||| |  |||||||  ||||||||||||||||||||||||    
T  13109678 aggatcaaactggaaatcctatgagatgttgtgcagtcttttttccaaaaaaaatgtttgaatgttcatcat 13109749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 33053638 - 33053756
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacgt-tagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcc 179  Q
    |||||| ||||||||||||||||||| | |  ||| |||||||| |||| ||||||||||||||||||||||||| | |||||| ||||| || |||||     
T  33053638 tgtttaccggtgtttttggtaaacaataagactagttttaaatt-gttacttgcaggatcaaactagaaatcctagggcatgttttgcaa-tgattttct 33053735  T
Q  180 aaaaaatgtttgaatgttcat 200  Q
    | ||||| | |||||||||||    
T  33053736 agaaaatatatgaatgttcat 33053756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 20253496 - 20253599
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaat--tgtttttccaaaaaatgtttgaatgttcatcatgttcttgagattaaacatgaagaagatg 231  Q
    |||||||||||||   ||||| |||||||||||||||  | |||||||| ||| |||||||||||||||||||||| | |  || || || |||||||||    
T  20253496 aggatcaaactag---tcctaagacatgttgtgcaatgttttttttccataaattgtttgaatgttcatcatgttcataaatttgaatatcaagaagatg 20253592  T
Q  232 aagatta 238  Q
    |||||||    
T  20253593 aagatta 20253599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 22455396 - 22455326
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| |||||||||| || ||||||||||| | |||||||||||| |   ||||||||||||||    
T  22455396 gcaggatcaaaccagaaatcctaggatatgttgtgcaa-tctttttccaaaaagtacatgaatgttcatcat 22455326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 5527897 - 5527810
Alignment:
Q  116 tttaaattagttatttgcaggatcaaactag-aaatcctatgacatgtt-gtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||| || ||| ||||| ||||||||||| ||| |||||||||| || |||||||| || |||  |||||||||||||||||||||||    
T  5527897 tttaaactaattacttgcaagatcaaactagtaaaacctatgacatatttgtgcaattattgttc--aaaaatgtttgaatgttcatcat 5527810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 5892429 - 5892473
Alignment:
Q  158 catgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||||| | |||||||||||||| |||||||||||||||    
T  5892429 catgttgtgcaat-gattttccaaaaaatgattgaatgttcatcat 5892473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 11030459 - 11030499
Alignment:
Q  147 aaatcctatgacatgttgtgcaattgtttttccaaaaaatg 187  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  11030459 aaatcctacgacatgttgtgcaatggtttttccagaaaatg 11030499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 30913298 - 30913258
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaat 170  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  30913298 ttgcatgatcaaactagaaatcctagaacatgttgtgcaat 30913258  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 25473220 - 25473366
Alignment:
Q  88 cggtgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat-tgtttttccaaaaaat 186  Q
    ||||||||||||||||||| ||  ||| |||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||| | ||||| || |||||    
T  25473220 cggtgtttttggtaaacaagacactagttttaaaat-gttacttgcatgatcaaactagaaatcctaggacatgttgtgcaatgttttttttcagaaaat 25473318  T
Q  187 gtttgaatgttcatcatgttcttgagat-taaacatgaagaagatgaa 233  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||    
T  25473319 gtttgaatgttcatcatgttcttaagatgaaaacatgaaggagatgaa 25473366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 19011868 - 19011945
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||| ||||||||||||| ||||||||||| ||||| |||||||| | |||||||| ||| ||||||||||||||||||    
T  19011868 gttacttgcaggatcaaattagaaatcctaggacatattgtgcaa-tatttttccagaaattgtttgaatgttcatcat 19011945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 17162290 - 17162220
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||| |||||   ||||||||||||||    
T  17162290 gcaggatcaaaccagaaatcctatgacatgttgtgcaa-tctttttccataaaatacatgaatgttcatcat 17162220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 12605501 - 12605451
Alignment:
Q  150 tcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  12605501 tcctatggcatgttgtgcaattgttttttcagaaaatgtttgaatgttcat 12605451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 21770769 - 21770874
Alignment:
Q  83 tttatcggtgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaa 182  Q
    |||| |||||||||||||||| || ||| ||| ||||||||  ||| ||||||||||||| || | ||  || |||| ||||||||| ||||||| ||||    
T  21770769 tttaccggtgtttttggtaaataagacgctagttttaaatttattacttgcaggatcaaaataaatattataggacacgttgtgcaa-tgttttttcaaa 21770867  T
Q  183 aaatgtt 189  Q
    |||||||    
T  21770868 aaatgtt 21770874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 31000184 - 31000119
Alignment:
Q  137 atcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||||||||| | |||||||||| | | |||||||| |||||| |||||||||||||||    
T  31000184 atcaaactagaaatcctagggcatgttgtgc-agtatttttccagaaaatggttgaatgttcatcat 31000119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 13370191 - 13370261
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||  |||||| |||  ||||||||||||||  |||||||||||||| | ||||||||||||||    
T  13370191 gcaggatcaaatcagaaattctagaacatgttgtgcaatc-tttttccaaaaaatatgtgaatgttcatcat 13370261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 20515836 - 20515766
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| ||||||| || ||||||||||| || | |||||||| ||| ||| ||||||||||||||    
T  20515836 gcaggatcaaaccagaaatcttaggacatgttgtgtaa-tctttttccagaaagtgtatgaatgttcatcat 20515766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 15438330 - 15438253
Alignment:
Q  132 gcaggatcaaactagaaa-tcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttctt 209  Q
    ||||||| |||||||||| || ||||||||||||||||| | ||||| || ||||||| |||||||| |||| ||||||    
T  15438330 gcaggataaaactagaaaatcatatgacatgttgtgcaa-tcttttttcagaaaatgtatgaatgttaatcaagttctt 15438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 21498384 - 21498324
Alignment:
Q  138 tcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttca 199  Q
    |||||||||||||||||||| ||||||||||| |||| ||| | ||| ||| ||||||||||    
T  21498384 tcaaactagaaatcctatgatatgttgtgcaa-tgttattctagaaagtgtatgaatgttca 21498324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 16467587 - 16467519
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaat-tgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||| ||||||| || ||||| ||||||||| | |||||||||||||||   |||||||||||||    
T  16467587 gatcaaaccagaaatcataggacatattgtgcaatatttttttccaaaaaatgcacgaatgttcatcat 16467519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 31483288 - 31483320
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgt 162  Q
    ||||| |||||||||||||||||||||||||||    
T  31483288 ttgcatgatcaaactagaaatcctatgacatgt 31483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 17914328 - 17914480
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcca 180  Q
    |||||| ||||||||||||||||||| ||  ||  ||||||  ||||  |||||||| |||||||||||||||| |||||||| |||||| |||||||||    
T  17914328 tgtttaccggtgtttttggtaaacaagacactaattttaaa--agtttcttgcaggaccaaactagaaatcctaggacatgttatgcaat-gtttttcca 17914424  T
Q  181 aaaaatgtttgaatgttcatcatgttcttgagattaaacatgaagaagatgaagat 236  Q
     |||| |||||||||  ||||||| |||| ||| |||||| |||||||||||||||    
T  17914425 gaaaaggtttgaatgcccatcatgctcttaagaataaacacgaagaagatgaagat 17914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 14629074 - 14628988
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttcttgag 212  Q
    |||| ||||||||| ||||||||||| ||| ||||| ||||||||  ||||||||  ||||||| |||||||||||||| ||| ||||    
T  14629074 gttacttgcaggattaaactagaaattctaggacatattgtgcaa-ggtttttcctcaaaatgtatgaatgttcatcatattcatgag 14628988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 12468750 - 12468808
Alignment:
Q  145 agaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||| |||||||| ||||||  |||||||| ||||| | ||||||||||||||    
T  12468750 agaaatcctaggacatgttatgcaatcttttttccataaaatatatgaatgttcatcat 12468808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 18046281 - 18046350
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatca 202  Q
    ||||||||||||||||||| ||| ||||||||||||||  ||||||||| |||| |  |||| ||||||||    
T  18046281 gcaggatcaaactagaaatactaggacatgttgtgcaa-agtttttccagaaaaagagtgaacgttcatca 18046350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 4587729 - 4587801
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||| ||| |||||||||||| ||  ||||||||||| ||  |||||| | ||||||||||||||||||||||    
T  4587729 ttgcaagattaaactagaaatcgtagcacatgttgtgcgatcttttttc-agaaaatgtttgaatgttcatcat 4587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 9022820 - 9022764
Alignment:
Q  145 agaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatca 202  Q
    |||||||||| |||||||||||||| ||||||| |||||||||  |||| ||||||||    
T  9022820 agaaatcctaggacatgttgtgcaa-tgtttttacaaaaaatgagtgaacgttcatca 9022764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 4094015 - 4093948
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaa 149  Q
    |||||||| ||||||||||||||| || || ||| ||| ||||| ||| ||||| ||||||||||||||    
T  4094015 tgtttatctgtgtttttggtaaac-aatcgctagttttgaattaattacttgcatgatcaaactagaaa 4093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 8264286 - 8264176
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttcttgagattaaacatgaa 224  Q
    |||| ||||| ||| |||||| |||| ||| |||||| |||| ||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||    
T  8264286 gttacttgcacgattaaactaaaaattctaggacatgatgtgtaat-gttttttcaaaaaatgtttgaatattcatcatgttcttgagatgaaacatgaa 8264188  T
Q  225 gaagatgaagat 236  Q
    ||||||||||||    
T  8264187 gaagatgaagat 8264176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 14132379 - 14132310
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatca 202  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||  |||||||||||||    
T  14132379 gcaggatcaaactagaaatccaaggacatgttgtgcaa-tgtttttccaaaaagtgagtgaatgttcatca 14132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 1085526 - 1085598
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||| | ||||| | ||||||||||||||    
T  1085526 ttgcaggatcaaactagaaatcctaggacatgttgtgcaa-tgattttctagaaaatatatgaatgttcatcat 1085598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 15987391 - 15987459
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||||| ||||| | ||||||||||||||    
T  15987391 aggatcaaactagaaattctaggacatgttgtgcaa-tctttttccataaaatatatgaatgttcatcat 15987459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 9013971 - 9014042
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaat----tgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||| ||||||||||||||||||||||||    | || ||||| ||| ||||||||||||||||||    
T  9013971 gatcaaactacaaatcctatgacatgttgtgcaatgttcttttcttccagaaagtgtttgaatgttcatcat 9014042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 19112540 - 19112633
Alignment:
Q  106 aaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    ||||| ||| ||||||||  |||||||| ||||||||||| ||||||||||| || |||||| | || | ||| | |||||||||||||||||||    
T  19112540 aaacgctagttttaaatttattatttgcgggatcaaactaaaaatcctatgatatattgtgccaatg-tattcgataaaatgtttgaatgttcat 19112633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 27304719 - 27304674
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgttttt 177  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||    
T  27304719 gcaggatcaaaccaaaaatcctatgacatgttgtgcatttgttttt 27304674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 19116091 - 19116154
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    ||||||||||||||| |||||| || |||||||| || | ||||| |||||||||||||||||||    
T  19116091 gatcaaactagaaattctatgaaatattgtgcaaatg-tattccataaaatgtttgaatgttcat 19116154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 39584053 - 39583974
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaa-cgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacat 160  Q
    |||||||| |||||||||||||||||||  ||||| |||||| | |||| ||||| |||||||||||||||| || |||||    
T  39584053 tgtttatcagtgtttttggtaaacaaaagtgttagttttaaaat-gttacttgcatgatcaaactagaaatcttaggacat 39583974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 4023022 - 4022952
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| |||| || ||||||||||||||||| | |||||| |||||||   ||||||||||||||    
T  4023022 gcaggatcaaaccagaattcttatgacatgttgtgcaa-tctttttctaaaaaatacatgaatgttcatcat 4022952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 20168964 - 20169120
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaa-cgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcc 179  Q
    |||||||| |||||||||||||||||||  | ||| |||||| | |||| ||||||||||||| |||   || || |||||||||||||| ||||||| |    
T  20168964 tgtttatcagtgtttttggtaaacaaaagtgctagttttaaaat-gttacttgcaggatcaaattagttttcataagacatgttgtgcaa-tgtttttgc 20169061  T
Q  180 --aaaaaatgtttgaatgttcatcatgttcttgagattaaacatgaagaagatgaagat 236  Q
      ||||||   ||||||||||||  || | ||  || ||||||||||||||||||||||    
T  20169062 aaaaaaaaaaattgaatgttcattgtgcttttaggaataaacatgaagaagatgaagat 20169120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 48895855 - 48895925
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||||||||||  || |||||| ||||||| | |||||||||||||||| ||| |||| |||||    
T  48895855 gcaggatcaaactagaaattttaggacatgatgtgcaa-tctttttccaaaaaatgtgtgagtgtttatcat 48895925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 9101933 - 9101867
Alignment:
Q  137 atcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||||| |||||| || |||||||||  ||||| |||||| ||| |||||||| |||||    
T  9101933 atcaaactagaaattctatgatatattgtgcaatgtttttttcaaaaagtgtctgaatgtttatcat 9101867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 20623067 - 20623136
Alignment:
Q  91 tgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatg 161  Q
    ||||||||||||||||| | |||| ||||||||| || |||| |||||||||||| ||||| ||| |||||    
T  20623067 tgtttttggtaaacaaa-cattagttttaaattaattgtttgtaggatcaaactaaaaatcttatcacatg 20623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 1744900 - 1744968
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||| ||| |||||||| || || ||||||||||||  |||||| ||||||||| ||||||||||||||    
T  1744900 aggattaaattagaaatcttaggatatgttgtgcaatcttttttc-aaaaaatgtatgaatgttcatcat 1744968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 26013662 - 26013707
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgttttt 177  Q
    |||||||||||  ||||||| |||||||||||||||| ||||||||    
T  26013662 gcaggatcaaatcagaaatcttatgacatgttgtgcatttgttttt 26013707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 53589404 - 53589335
Alignment:
Q  134 aggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||| |||||||||| ||||| |||||||||  ||||| || |||||   ||||||||||||||    
T  53589404 aggatcaaaccagaaatcctaggacattttgtgcaatctttttttcagaaaatacatgaatgttcatcat 53589335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 5628156 - 5628015
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcca 180  Q
    |||||| ||||||||||||||||||| ||| ||  |||||| || ||| |||||||||||||||| ||||  || || ||||| ||||||   ||||| |    
T  5628156 tgtttaccggtgtttttggtaaacaagacgctaattttaaaata-ttacttgcaggatcaaactaaaaattttaggatatgtt-tgcaatatattttcta 5628059  T
Q  181 aaaaatgtttgaatgttcatcatgttcttgagattaaacatgaa 224  Q
     |||||||||||||||||||||||||||| |||| |||||||||    
T  5628058 gaaaatgtttgaatgttcatcatgttcttaagatgaaacatgaa 5628015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 24332849 - 24332700
Alignment:
Q  86 atcggtgtttttggtaaacaa-aacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaa 184  Q
    ||||||||||||||||||||| || ||||| ||||||  ||||| |||||  ||||||||||||||  ||||||||||||||||||  |||||   ||||    
T  24332849 atcggtgtttttggtaaacaagaatgttagttttaaa--agttacttgcataatcaaactagaaattttatgacatgttgtgcaatgtttttttagaaaa 24332752  T
Q  185 atgtttgaatgttcatcatgttcttgagattaaacatgaagaagatgaagat 236  Q
     ||||||||||||| ||||||| ||||  || || ||||| | |||||||||    
T  24332751 gtgtttgaatgttcttcatgttattgaattttaatatgaaaaggatgaagat 24332700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 49300546 - 49300431
Alignment:
Q  91 tgtttttggtaaacaaaacgttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgttt 190  Q
    ||||||||  |||||| | | ||| ||||||||| ||||||| |||||||||||||||||| ||  || | |||||||||||||||| || |||||||||    
T  49300546 tgtttttgaaaaacaagatgctagttttaaattacttatttgtaggatcaaactagaaatcttagaacttattgtgcaattgttttt-cagaaaatgttt 49300448  T
Q  191 gaatgttcatcatgttc 207  Q
    |||||||||| ||||||    
T  49300447 gaatgttcatgatgttc 49300431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 6244212 - 6244146
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||    
T  6244212 gatcaaactagaaatcctatgccatgttgtgcaa-tctttttccagaaaatgtttgaatgttcatcat 6244146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 10398661 - 10398788
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttcttgagattaaacatgaagaaga 229  Q
    |||||||||||||||||||| |||| ||||| |||||||| ||||||| |||||||||||||||| |||||  ||||| |||| || ||  | || ||||    
T  10398661 ttgcaggatcaaactagaaaccctaggacatattgtgcaaatgttttt-caaaaaatgtttgaatattcatggtgttcctgagtttgaatgtaaaaaaga 10398759  T
Q  230 tgaagattattgccttgttcaacaaaatc 258  Q
    | ||||| |||| ||||||| ||| ||||    
T  10398760 tcaagataattgtcttgttcgacataatc 10398788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 26654395 - 26654323
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttctt 209  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||| ||||||| |||||||||| || ||||||    
T  26654395 gatcaaactagaaatcccatgacatgttgtgcaa-agtttttccagaaaatgtatgaatgttcaccaagttctt 26654323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 24476115 - 24476187
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||||||| |||||  | | |||||||||||||  |||||||| ||||||||||||||||||||||    
T  24476115 ttgcaggatcaaactaaaaatcgcaaggcatgttgtgcaatc-tttttccagaaaatgtttgaatgttcatcat 24476187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 4635932 - 4636008
Alignment:
Q  172 gtttttccaaaaaatgtttgaatgttcatcatgttcttgagattaaacatgaagaagatgaagattattgccttgtt 248  Q
    |||||| |||||||||||||| ||||||| ||||||| ||| ||||||||||| | ||| ||||| | |||||||||    
T  4635932 gttttttcaaaaaatgtttgagtgttcatgatgttctagagtttaaacatgaaaaggattaagataactgccttgtt 4636008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 42454556 - 42454674
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacg-ttagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcc 179  Q
    |||||| |||||||| |||||||||| | | |||| |||||||| |||| |||||||||||||||||||||  |||| |||  ||||||| ||  |||||    
T  42454556 tgtttaccggtgtttgtggtaaacaataagattagttttaaatt-gttacttgcaggatcaaactagaaattttatggcatagtgtgcaa-tgagtttcc 42454653  T
Q  180 aaaaaatgtttgaatgttcat 200  Q
    ||||||| | |||||||||||    
T  42454654 aaaaaatatatgaatgttcat 42454674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 14540380 - 14540445
Alignment:
Q  137 atcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| ||||| | |||||||||||| | |||||||| || | |||||||||||||||||    
T  14540380 atcaaactagaattcctaaggcatgttgtgcaa-tctttttccagaagaggtttgaatgttcatcat 14540445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 41635674 - 41635611
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    |||| |||||||||||||| | |||||||||||| || ||||| | ||||||| |||||||||||    
T  41635674 gatcgaactagaaatcctagggcatgttgtgcaa-tgattttctagaaaatgtatgaatgttcat 41635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 21166476 - 21166391
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttcttga 211  Q
    |||| ||| ||||||||||||||||| ||| |||||||||||||| || ||||||| ||||||| |||||||||||||| |||||||    
T  21166476 gttacttgtaggatcaaactagaaattctaggacatgttgtgcaa-tgattttccagaaaatgtatgaatgttcatcatattcttga 21166391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 22987545 - 22987615
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||||| ||| ||| ||||||||||||||    
T  22987545 gcaggatcaaactagaaatcatatgacatgttgtgcaa-tctttttccagaaagtgtgtgaatgttcatcat 22987615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 21171095 - 21171012
Alignment:
Q  124 agttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttcttga 211  Q
    ||||| ||||||||||||||||||||| ||| ||||   ||||||| || ||||||| ||||||| |||||||||||||| |||||||    
T  21171095 agttacttgcaggatcaaactagaaattctaggaca---tgtgcaa-tgattttccagaaaatgtatgaatgttcatcatattcttga 21171012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 28619534 - 28619464
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||||||| ||||||| || |||||||||||||| |  ||||||| ||||||| ||||||||||||||    
T  28619534 gcaggatcaaaccagaaatcataggacatgttgtgcaa-tccttttccagaaaatgtgtgaatgttcatcat 28619464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 10235868 - 10235934
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||||||| |||||| ||| |||||||||||||| | ||||||||||||||   ||||||||||||||    
T  10235868 gatcaaaccagaaattctaggacatgttgtgcaa-tctttttccaaaaaatacatgaatgttcatcat 10235934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 24114677 - 24114561
Alignment:
Q  82 gtttatcggtgtttttggtaaacaaaacgt-tagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcca 180  Q
    |||||||||||||||||| |||| | | |  ||| |||||||| |||| ||||||||| |||||| |||||||| | |||| |||||||| | |||||||    
T  24114677 gtttatcggtgtttttggaaaaccataagactagttttaaatt-gttacttgcaggattaaacta-aaatcctagggcatgatgtgcaat-gattttcca 24114581  T
Q  181 aaaaatgtttgaatgttcat 200  Q
     ||||||| |||||||||||    
T  24114580 gaaaatgtatgaatgttcat 24114561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 19924302 - 19924257
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgttttt 177  Q
    |||||||||| ||| |||||||| ||||||||||||| ||||||||    
T  19924302 gcaggatcaacctaaaaatcctaggacatgttgtgcatttgttttt 19924257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 22847845 - 22847893
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaa 185  Q
    ||||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  22847845 gatcaaactagaaatcctaggacattttgtgcaa-agtttttccaaaaaa 22847893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 22849415 - 22849470
Alignment:
Q  147 aaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    |||| ||||||||| |||||||||  |||||||| ||||||| ||||||||||||||    
T  22849415 aaatactatgacatattgtgcaatc-tttttccagaaaatgtatgaatgttcatcat 22849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 24364459 - 24364387
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaa-aaaatgtttgaatgttcatcat 203  Q
    |||||||||||| || |||||||  ||||||| ||||||  ||||||||| ||||||| |||| |||||||||    
T  24364459 gcaggatcaaaccaggaatcctagaacatgttctgcaatcttttttccaaaaaaatgtgtgaacgttcatcat 24364387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 39838827 - 39838751
Alignment:
Q  124 agttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    ||||||||| ||||||||| |||||||| |  ||||||||||||||    ||||| | ||||||| |||||||||||    
T  39838827 agttatttgtaggatcaaattagaaatctttggacatgttgtgcaaagtattttcaagaaaatgtatgaatgttcat 39838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 22259510 - 22259443
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttc 198  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||||||| || |||||||||||||||||    
T  22259510 ttgcaggatgaaactagaaatcctataacatgttgtgcaa-tgttttttcagaaaatgtttgaatgttc 22259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 6038779 - 6038851
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcat 203  Q
    ||||||||||||||||||||||||| |  || |||||||| | |||||||| |||||| |||||||||||||||    
T  6038779 ttgcaggatcaaactagaaatcctagggaatattgtgcaa-tctttttccagaaaatgcttgaatgttcatcat 6038851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 3634199 - 3634320
Alignment:
Q  81 tgtttatcggtgtttttggtaaacaaaacgt-tagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttcc 179  Q
    |||||| ||||||||||||||||||| | |  ||| ||||||| | ||| ||||||||||||||| ||| ||||| |||||||||||||| || |||| |    
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaataa-ttacttgcaggatcaaactggaagtcctaggacatgttgtgcaa-tgatttttc 3634296  T
Q  180 aaaaaatgtttgaatgttcatcat 203  Q
    | ||||||| ||||  ||||||||    
T  3634297 agaaaatgtatgaacattcatcat 3634320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 28712196 - 28712259
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    |||||||| |||||||||| |||||||||||||| | |||||||| ||| ||| |||||||||||    
T  28712196 gatcaaaccagaaatcctaggacatgttgtgcaa-tctttttccataaagtgtatgaatgttcat 28712259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 16434164 - 16434233
Alignment:
Q  130 ttgcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcat 200  Q
    ||||||||| |||||||||||| ||||| ||||||||||| |  |||| |||||||| | |||||||||||    
T  16434164 ttgcaggattaaactagaaatcatatgatatgttgtgcaa-tcattttacaaaaaatatatgaatgttcat 16434233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 16142374 - 16142407
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaa 169  Q
    ||||||||||||||||||| ||||||||||||||    
T  16142374 gatcaaactagaaatcctaggacatgttgtgcaa 16142407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 28623239 - 28623310
Alignment:
Q  136 gatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatcatgttc 207  Q
    |||||||||| ||||||||  ||||||||||||||  |||||||||||||| |||||||| || ||||||||    
T  28623239 gatcaaactaaaaatcctaaaacatgttgtgcaatgttttttccaaaaaatatttgaatgctcgtcatgttc 28623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 11110452 - 11110497
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 170  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  11110452 gttatttgtaggatcaaactaaaaatcctatgacacgttgtgcaat 11110497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 17615084 - 17615122
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaat 170  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  17615084 gcaggatcaaaccagaaatcctaggacatgttgtgcaat 17615122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 33102858 - 33102903
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgttttt 177  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  33102858 gcaggatcaaaccagaaatcttaggacatgttgtgcatttgttttt 33102903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 789 - 731
Alignment:
Q  138 tcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgtt 197  Q
    ||||||||||||||||| |||||||||||||| | |||||||| ||||||| ||||||||    
T  789 tcaaactagaaatcctaggacatgttgtgcaa-tctttttccataaaatgtatgaatgtt 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 33531 - 33462
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgcaattgtttttccaaaaaatgtttgaatgttcatca 202  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||| ||| ||  ||| |||||||||    
T  33531 gcaggatcaaaccagaaatcctatgacatgttgtgcaa-agtttttccagaaagtgagtgagtgttcatca 33462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 5889 - 5934
Alignment:
Q  125 gttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 170  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  5889 gttatttgtaggatcaaactaaaaatcctatgacacgttgtgcaat 5934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 39204 - 39159
Alignment:
Q  132 gcaggatcaaactagaaatcctatgacatgttgtgca-attgtttt 176  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||    
T  39204 gcaggatcaaactagaaatcttaggacatgttgtgcatattgtttt 39159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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