View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_4 (Length: 553)
Name: NF2218_low_4
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 541
Target Start/End: Original strand, 31322262 - 31322783
Alignment:
| Q |
19 |
agattcgggatcagtggagaagcaatgaaagctaagaacttgtcatttagagtcggagtaagaggtggttacctggccttcaacacattcatagctgctc |
118 |
Q |
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| T |
31322262 |
agattcgggatcagtggagaagcaatgaaagctaagaacttgtcatttagagtcggagtaagaggtggttacctggccttcaacacattcatagctgctc |
31322361 |
T |
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| Q |
119 |
ttctgccattccttggagattttgagagcctcacaggagcgatcagcacgtttccgcttacatttattcttgcaaaccatatgtactacaaggcgaagaa |
218 |
Q |
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| T |
31322362 |
ttctgccattccttggagatttcgagagcctcacaggagcgatcagcacgtttccgcttacatttattcttgcaaaccatatgtactataaggcgaagaa |
31322461 |
T |
|
| Q |
219 |
gaacaaactatcaatttcgcagaagggcggcctctgggccaacattgttttctttagcctcatgtctattgctgcaactgttgcggcaatacggctcatt |
318 |
Q |
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| T |
31322462 |
gaacaaactatcaatttcacagaagggcggcctctgggccaacattgttttctttagcctcatgtctattgctgcaactgttgcggcaatacggctcatt |
31322561 |
T |
|
| Q |
319 |
tcagtagactccaaaacatacagtctatttgcagatatttgatcaaactcttatgctctttcagcagtttactttattaaacttttatattctttcagca |
418 |
Q |
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| T |
31322562 |
gcagtagactccaaaacatacagtctatttgcagatatttgatcaaactctta-actctttcagcagtttactttattaaacttttatattctttcagca |
31322660 |
T |
|
| Q |
419 |
attttaaatgctttgattgttggctagaatttgcttgcggaatattgtattattgtattctgttgaaaagacaactcttagtcaataatattaaagacag |
518 |
Q |
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| T |
31322661 |
attataaatgctttcattgttggctagaatttgcttgcggaatattgtattattgtattctgttgaaaagacaactcttagtcaataatattaaagacag |
31322760 |
T |
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| Q |
519 |
ttctaacttcaaatacacaggtt |
541 |
Q |
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| T |
31322761 |
ttctaacttcaaatacacaggtt |
31322783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 34979026 - 34979179
Alignment:
| Q |
51 |
taagaacttgtcatttagagtcggagtaagaggtggttacctggccttcaacacattcatagctgctcttctgccattccttggagattttgagagcctc |
150 |
Q |
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||||||||||||||||||| || ||||||||||| ||| || | || || ||||| || | ||||| ||||||||||||||||||| ||||||| |
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| T |
34979026 |
taagaacttgtcatttagaatcttggtaagaggtggctacatgactttgaatacatttgtatcagctctattgccattccttggagatttcatgagcctc |
34979125 |
T |
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| Q |
151 |
acaggagcgatcagcacgtttccgcttacatttattcttgcaaaccatatgtac |
204 |
Q |
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| T |
34979126 |
acaggagctataagcacatttcctcttacatttatccttgcaaatcatatgtac |
34979179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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