View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_43 (Length: 251)
Name: NF2218_low_43
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4670062 - 4669820
Alignment:
| Q |
1 |
atatctatgcaaattacaatgacttaacaaagttagtgaagtgaaa---------tgttctctagtgagcttttcgactggtccaaaatatcaagatgca |
91 |
Q |
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| T |
4670062 |
atatctatgcaaattacaatgacttaacaaagttagtgaagtgaaagtcactaaatgttgtctagtgagcttttcgactagtccaaaatatcaagataca |
4669963 |
T |
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| Q |
92 |
tatg-atgccattcctatctatgcatgacaccttgtactttgaagacttagacaatataattgttgtgccttgtatgacggttatgccaatgcatactca |
190 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669962 |
tatggatgccattcctatcgatgcatgacaccttgtactttgaagacttagacaatataattgttgtgccttgtatgacggttatgccaatgcatactca |
4669863 |
T |
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| Q |
191 |
tttgttaaagatgtagtaaaagtcaacctaattatgttatcag |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669862 |
tttgttaaagatgtagtaaaagtcaacctaattatgttatcag |
4669820 |
T |
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