View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2218_low_44 (Length: 250)
Name: NF2218_low_44
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 23438415 - 23438650
Alignment:
| Q |
8 |
cagcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438415 |
cagcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagc |
23438514 |
T |
|
| Q |
108 |
ttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438515 |
ttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaa |
23438614 |
T |
|
| Q |
208 |
agaggttgagactcttcccacgacttactcttctac |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438615 |
agaggttgagactcttcccacgacttactcttctac |
23438650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 23430387 - 23430587
Alignment:
| Q |
32 |
cattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataa |
131 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||| | ||||| |||| ||||||||| |||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
23430387 |
cattcatttttcatctatatataaaacgagaatcatacattaattaa----atccatttt-cttctacaataaagcttattattactttctcttgcatac |
23430481 |
T |
|
| Q |
132 |
gaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgac |
231 |
Q |
| |
|
||||||||| ||||||||| ||||||| | ||||||||||||||||| || |||| || | || ||||||| |||||||| ||| ||||||||| || |
|
|
| T |
23430482 |
-aaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctgaagaggttaagaatcttcccaccac |
23430580 |
T |
|
| Q |
232 |
ttactct |
238 |
Q |
| |
|
||||||| |
|
|
| T |
23430581 |
ttactct |
23430587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 23445216 - 23445385
Alignment:
| Q |
73 |
cattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctc |
172 |
Q |
| |
|
||||| || |||| |||||||||| | |||||| |||||||||||||||||||||||| |||| |||| |||| |||| |||||| || ||| | ||| |
|
|
| T |
23445216 |
cattagtctcatcaatttttcttctacaataaaacttatttttactttctcttgcatatcaaaa-tgtccaaagccatgaccttagtgttgctcctcctc |
23445314 |
T |
|
| Q |
173 |
ctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgacttactcttctac |
243 |
Q |
| |
|
|||||| | | || |||||||||||||||| |||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
23445315 |
ctagttttgtctcttttcactacggtgctttctgaagaggttgagactcttcccgccacttactctcctac |
23445385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University