View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_48 (Length: 238)
Name: NF2218_low_48
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15161272 - 15161493
Alignment:
| Q |
1 |
aaaatctataaaaagcaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagtttctgaatcaaatagatagaactatt |
100 |
Q |
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| T |
15161272 |
aaaatctataaaaaccaaaaagacaatcaataccacttgaattccacatcaatacaaaaaggagaacctatagtttctgaatcaaatagatagaactatt |
15161371 |
T |
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| Q |
101 |
gttagcagagaacacagttcacagaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcatagaaatgaccaaattggcaaattag |
200 |
Q |
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| T |
15161372 |
gttagcagagaacacagttcacagaaacaagcatgtactggactatttattagcatttgtgatgataaaagtcatagaaatgaccaaattgacaaattag |
15161471 |
T |
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| Q |
201 |
actagcaccggcacgtacacca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15161472 |
actagcaccggcacgtacacca |
15161493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 18812589 - 18812456
Alignment:
| Q |
83 |
caaatagatagaactattgttagcagagaacacagttcacagaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcatagaa--- |
179 |
Q |
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| T |
18812589 |
caaatagagagaactattgttagcagagaacac-gttcatagaaacaagcatgtgcttgacattttattagcatttgtgatgataaaagtcatagaaatg |
18812491 |
T |
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| Q |
180 |
-atgaccaaattggcaaattagactagcaccggca |
213 |
Q |
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| T |
18812490 |
aatgaccaaattggaaaattagactagcaccggca |
18812456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 37727630 - 37727729
Alignment:
| Q |
35 |
acttgaattccacatcaatacaaaaaggagaacctatagtttc---tgaatcaaatagatagaactattgttagcagagaacacagttcacagaaacaag |
131 |
Q |
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| T |
37727630 |
acttgaattccacgtcaatacaaaaaggaaagcccatagtttctgatgaatcgaatacatataactattgttagctgataacacagttcaaggaaacaag |
37727729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 29491463 - 29491377
Alignment:
| Q |
123 |
agaaacaagcatgtgctggactatttattagcatttgtgatgataaaagtcatagaaatgaccaaattggcaaattagactagcacc |
209 |
Q |
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| T |
29491463 |
agaaacgagcatgtgctagactttttgttagtatttgtggaaataaaagtcatagaaatgaccaaattggcaaatttgactagcacc |
29491377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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