View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2218_low_54 (Length: 222)
Name: NF2218_low_54
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2218_low_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 5514886 - 5515095
Alignment:
| Q |
13 |
tgaatatttaaggggtttaccacaattttgcatttagtcttcatatttcatttggattaactatttatttaaggcaaaaggactattttactttataccc |
112 |
Q |
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| T |
5514886 |
tgaatatttaaggggtttaccacaattttgcatttagtcttcatatttcatttggattaactatttatttaagacaaaaggactattttattttataccc |
5514985 |
T |
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| Q |
113 |
aatacttcattattttaataagatttcttttgttgttatttggtatataccagcttttataccttgcaagtatacatctgactgtccagaaaatacgtgt |
212 |
Q |
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| T |
5514986 |
aatactttattattttaataagatttcttttgttgttatttggtatataccagcttttataccttgcaagtatacatctgactgtccagaaaatacgtgt |
5515085 |
T |
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| Q |
213 |
tggcctcctc |
222 |
Q |
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| T |
5515086 |
tggcctcctc |
5515095 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28808379 - 28808435
Alignment:
| Q |
15 |
aatatttaaggggtttaccacaattttgcatttagtcttcatatttcatttggatta |
71 |
Q |
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| T |
28808379 |
aatatttaaagggtttaccacccttttgcattgagtcttcatatttcttttgcatta |
28808435 |
T |
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