View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2218_low_58 (Length: 214)

Name: NF2218_low_58
Description: NF2218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2218_low_58
NF2218_low_58
[»] chr1 (4 HSPs)
chr1 (1-158)||(36629533-36629690)
chr1 (161-194)||(12277190-12277223)
chr1 (161-194)||(17746500-17746533)
chr1 (161-194)||(31653988-31654021)
[»] chr6 (1 HSPs)
chr6 (161-194)||(2033120-2033153)
[»] chr4 (1 HSPs)
chr4 (161-194)||(31592767-31592800)
[»] chr3 (1 HSPs)
chr3 (161-194)||(46993875-46993908)
[»] chr2 (2 HSPs)
chr2 (161-194)||(8898454-8898487)
chr2 (161-194)||(32195908-32195941)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 36629690 - 36629533
Alignment:
Q  1 tcaatcccaaaacaacaaatgagcgtatcccgagatcctaaaccgatggaagttaattagggtgttttctctaaagaaacaggagtgcaaatagcaactt 100  Q
    ||||||||||| | |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36629690 tcaatcccaaacctacaaatgagcatatcccgaggtcctaaaccgatggaagttaattggggtgttttctctaaagaaacaggagtgcaaatagtaactt 36629591  T
Q  101 gtatgagaaatacacatttccttaaccagcccaattgaagataaataaatatacaatt 158  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36629590 gtaggagaaatacacatttccttaacgagcccaattgaagataaatgaatatacaatt 36629533  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 12277190 - 12277223
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  12277190 gttaatggtgttttacctcctgtaatataggtca 12277223  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 17746533 - 17746500
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||| ||||||||||||||||    
T  17746533 gttaatggtgttttaccccctataatataggtca 17746500  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 31653988 - 31654021
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  31653988 gttaatggtgttttacctcctgtaatataggtca 31654021  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 2033153 - 2033120
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||| ||||||||||||||||    
T  2033153 gttaatggtgttttaccccctataatataggtca 2033120  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 31592800 - 31592767
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  31592800 gttaatggtgttttacctcctgtaatataggtca 31592767  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 46993875 - 46993908
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  46993875 gttaatggtgttttacctcctgtaatataggtca 46993908  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 8898487 - 8898454
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    |||||||||| |||||||||||||||||||||||    
T  8898487 gttaatggtgctttacctcctataatataggtca 8898454  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 32195908 - 32195941
Alignment:
Q  161 gttaatggtgttttacctcctataatataggtca 194  Q
    ||||||||||||||||| ||||||||||||||||    
T  32195908 gttaatggtgttttaccccctataatataggtca 32195941  T

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