View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2219_low_1 (Length: 327)

Name: NF2219_low_1
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2219_low_1
NF2219_low_1
[»] chr3 (4 HSPs)
chr3 (16-183)||(38540135-38540302)
chr3 (188-236)||(28080532-28080580)
chr3 (188-236)||(28145018-28145066)
chr3 (15-74)||(27266774-27266833)
[»] chr2 (1 HSPs)
chr2 (192-238)||(2703127-2703172)
[»] chr1 (3 HSPs)
chr1 (188-238)||(35812124-35812174)
chr1 (189-238)||(20990292-20990341)
chr1 (190-237)||(12698965-12699012)
[»] chr5 (1 HSPs)
chr5 (189-234)||(22615124-22615169)
[»] scaffold0361 (1 HSPs)
scaffold0361 (16-74)||(14094-14152)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 38540302 - 38540135
Alignment:
Q  16 atttttacactccaatttcttgttcaacttactttcatatgaaactatccaaacataaaccatttccctcaaagcaacggtactagtacgctaccggata 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38540302 atttttacactccaatttcttgttcaacttactttcgtatgaaactatccaaacataaaccatttccctcaaagcaacggtactagtacgctaccggata 38540203  T
Q  116 cgactccgggtatgagatacatcgtttcnnnnnnntgaaggtaccatcgtaccgataggtcgataaaa 183  Q
    ||||||||||||||||||||||||||||       |||||||||| |||||||||||||| |||||||    
T  38540202 cgactccgggtatgagatacatcgtttcaaaaaaatgaaggtaccgtcgtaccgataggtagataaaa 38540135  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 28080580 - 28080532
Alignment:
Q  188 tgagttttgttatataatgtaacatgagagagctaaattattcaattta 236  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||||||||||    
T  28080580 tgagttttgttacataatataaaatgagagggctaaattattcaattta 28080532  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 28145066 - 28145018
Alignment:
Q  188 tgagttttgttatataatgtaacatgagagagctaaattattcaattta 236  Q
    ||||||||| |||||||| ||||||||||| |||||||| |||||||||    
T  28145066 tgagttttgctatataatataacatgagagggctaaattcttcaattta 28145018  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 27266833 - 27266774
Alignment:
Q  15 aatttttacactccaatttcttgttcaacttactttcatatgaaactatccaaacataaa 74  Q
    ||||||||||||| ||||| |||||||||| ||||| | |||||| |||| |||||||||    
T  27266833 aatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaacataaa 27266774  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 2703127 - 2703172
Alignment:
Q  192 ttttgttatataatgtaacatgagagagctaaattattcaatttaca 238  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  2703127 ttttgttatataatgtaacatgaga-agctaaattattcaatttaca 2703172  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 35812124 - 35812174
Alignment:
Q  188 tgagttttgttatataatgtaacatgagagagctaaattattcaatttaca 238  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  35812124 tgagttttgttatataatataacatgagagagctgaattcttcaatttaca 35812174  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 20990292 - 20990341
Alignment:
Q  189 gagttttgttatataatgtaacatgagagagctaaattattcaatttaca 238  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  20990292 gagttttgttatataatataacatgagaaagctaaattcttcaatttaca 20990341  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 12699012 - 12698965
Alignment:
Q  190 agttttgttatataatgtaacatgagagagctaaattattcaatttac 237  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||    
T  12699012 agttttgttatataatataacatgagagagctaagttcttcaatttac 12698965  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 22615124 - 22615169
Alignment:
Q  189 gagttttgttatataatgtaacatgagagagctaaattattcaatt 234  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||    
T  22615124 gagttttattctataatgtaacatgagagagctaaattgttcaatt 22615169  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 14152 - 14094
Alignment:
Q  16 atttttacactccaatttcttgttcaacttactttcatatgaaactatccaaacataaa 74  Q
    |||||||||||| ||||| || ||||||| ||||||| |||||  ||||||||||||||    
T  14152 atttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaa 14094  T

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