View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2219_low_10 (Length: 333)

Name: NF2219_low_10
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2219_low_10
NF2219_low_10
[»] chr2 (7 HSPs)
chr2 (164-254)||(25457184-25457272)
chr2 (9-107)||(25457294-25457389)
chr2 (44-80)||(10735863-10735899)
chr2 (40-76)||(45032682-45032718)
chr2 (44-75)||(14463782-14463813)
chr2 (41-76)||(35820337-35820372)
chr2 (44-76)||(9842238-9842270)
[»] chr6 (2 HSPs)
chr6 (40-76)||(16390418-16390454)
chr6 (42-79)||(14917808-14917845)
[»] chr1 (1 HSPs)
chr1 (43-76)||(17139553-17139586)
[»] chr5 (1 HSPs)
chr5 (44-76)||(33133632-33133664)
[»] chr4 (1 HSPs)
chr4 (40-76)||(20799430-20799466)
[»] chr3 (4 HSPs)
chr3 (40-76)||(7738658-7738694)
chr3 (44-76)||(18554722-18554754)
chr3 (44-76)||(18870761-18870793)
chr3 (44-76)||(44764718-44764750)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 25457272 - 25457184
Alignment:
Q  164 aaaccaatctttctatttgatggcgacatatggaaaagtatatattcaactctttaaatgaatgtcagttacttcgtaagaaaattagtct 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||    
T  25457272 aaaccaatctttctatttgatggcgacatatgggaaagtatat--tcaactctttaaatgaatttcagttactttgtaagaaaattagtct 25457184  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 25457389 - 25457294
Alignment:
Q  9 aaagtttactttagtatagtcaaatataagcaattagtcctcgtgagcttacctcagttggtagggacgatgtaagattcgaggttcaaatttcggaca 107  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||  ||||||||||| |||||||||| || ||||||||||  |||||||    
T  25457389 aaagtttactttagtatagtcaaatatttgcaattagt-ctcgtgagcttac--cagttggtaggtacgatgtaaggtttgaggttcaaacctcggaca 25457294  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 10735899 - 10735863
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggacgatg 80  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10735899 agtcctcgtgagcttagctcagttggtagggacgatg 10735863  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 45032682 - 45032718
Alignment:
Q  40 aattagtcctcgtgagcttacctcagttggtagggac 76  Q
    |||| ||||||||||||||||||||||||||||||||    
T  45032682 aatttgtcctcgtgagcttacctcagttggtagggac 45032718  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 14463813 - 14463782
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtaggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  14463813 agtcctcgtgagcttacctcagttggtaggga 14463782  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 35820372 - 35820337
Alignment:
Q  41 attagtcctcgtgagcttacctcagttggtagggac 76  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35820372 attagtcctcgtgagcttagctcagttggtagggac 35820337  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 9842270 - 9842238
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggac 76  Q
    |||||||||||||||| ||||||||||||||||    
T  9842270 agtcctcgtgagcttagctcagttggtagggac 9842238  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 16390418 - 16390454
Alignment:
Q  40 aattagtcctcgtgagcttacctcagttggtagggac 76  Q
    |||| ||||||||||||||||||||||||||||||||    
T  16390418 aattggtcctcgtgagcttacctcagttggtagggac 16390454  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 14917845 - 14917808
Alignment:
Q  42 ttagtcctcgtgagcttacctcagttggtagggacgat 79  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  14917845 ttagtcctcatgagcttagctcagttggtagggacgat 14917808  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 17139586 - 17139553
Alignment:
Q  43 tagtcctcgtgagcttacctcagttggtagggac 76  Q
    ||||||||||||||||| ||||||||||||||||    
T  17139586 tagtcctcgtgagcttagctcagttggtagggac 17139553  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 33133632 - 33133664
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggac 76  Q
    |||||||||||||||| ||||||||||||||||    
T  33133632 agtcctcgtgagcttagctcagttggtagggac 33133664  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 20799466 - 20799430
Alignment:
Q  40 aattagtcctcgtgagcttacctcagttggtagggac 76  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  20799466 aattggtcctcgtgagcttagctcagttggtagggac 20799430  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 7738658 - 7738694
Alignment:
Q  40 aattagtcctcgtgagcttacctcagttggtagggac 76  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  7738658 aatttgtcctcgtgagcttaactcagttggtagggac 7738694  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 18554722 - 18554754
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggac 76  Q
    |||||||||||||||| ||||||||||||||||    
T  18554722 agtcctcgtgagcttaactcagttggtagggac 18554754  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 18870793 - 18870761
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggac 76  Q
    |||||||||||||||| ||||||||||||||||    
T  18870793 agtcctcgtgagcttagctcagttggtagggac 18870761  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 44764718 - 44764750
Alignment:
Q  44 agtcctcgtgagcttacctcagttggtagggac 76  Q
    |||||||||||||||| ||||||||||||||||    
T  44764718 agtcctcgtgagcttagctcagttggtagggac 44764750  T

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