View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2219_low_12 (Length: 305)
Name: NF2219_low_12
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2219_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 48837792 - 48837566
Alignment:
| Q |
30 |
aatacaatcatcatatcatagacatagatagatacatagaagctttggtccgtcttgctatcttgaatgacacaacacaaccttacattacatacattct |
129 |
Q |
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| T |
48837792 |
aatacaatcatcatatcatagacatagatagatacatagaagctttggtccgtcttgctatcttgaatgacacaacacaaccttacattacatacattct |
48837693 |
T |
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| Q |
130 |
ttttatactccttcaaatgctccttaaaatcaaggaggtgatgtggctcgttttactttaccccattaagtgtaataggcggtgctgcttatggtagtcc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48837692 |
ttttatactccttcaaatgctccttaaaatcaaggaggtgatgtggctcgttttactttaccccattaagtgtaataggcggtgctgcttatggtagtcc |
48837593 |
T |
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| Q |
230 |
aagtctcactgaaattaccaagctgat |
256 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
48837592 |
aggtctcactgaaattaccaagctgat |
48837566 |
T |
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