View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2219_low_13 (Length: 296)
Name: NF2219_low_13
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2219_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 13077282 - 13077526
Alignment:
| Q |
19 |
tgtgttctttcttctttagatatgcttgcttctggtaaatgaatgtgcctttccacctctttgtcttcttgtacttcttctacttttggaatttcattgc |
118 |
Q |
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| T |
13077282 |
tgtgttctttcttctttagatatgcttgcttctggtaaatgaatgtgcctttccacctctttgtcttcttgtacttcttctacttttggaatttcactgc |
13077381 |
T |
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| Q |
119 |
tcatgttttttggccttgtaaattcatgagcctctttcctttcaacnnnnnnncttggaggtttttcaaatgtagtaggtgaatccaactcaattttaga |
218 |
Q |
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| T |
13077382 |
tcatgatttttggccttgtaaattcatgagcctctttcctttcaactttttttcttggaggtttttcaaatgtagtaggtgaatccaactcaattttaga |
13077481 |
T |
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| Q |
219 |
agtgaattcttctggttctctttgatgttctctcaatggagtttc |
263 |
Q |
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| T |
13077482 |
agtgaattcttctggttctctttgatgttctctcaatggagtttc |
13077526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 13073078 - 13073322
Alignment:
| Q |
19 |
tgtgttctttcttctttagatatgcttgcttctggtaaatgaatgtgcctttccacctctttgtcttcttgtacttcttctacttttggaatttcattgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13073078 |
tgtgttctttcttctttagatatgcttgcttctggtaaatgaatgtgcctttccacctctttgtcttcttgtacttcttctacttttggaatttcaatgc |
13073177 |
T |
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| Q |
119 |
tcatgttttttggccttgtaaattcatgagcctctttcctttcaacnnnnnnncttggaggtttttcaaatgtagtaggtgaatccaactcaattttaga |
218 |
Q |
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| T |
13073178 |
taatgattaatggccttgtaaattcatgagcctctttcctttcaactttttttcttggaggtttttcaaatgtagtagatgaatccaactcaattttaaa |
13073277 |
T |
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| Q |
219 |
agtgaattcttctggttctctttgatgttctctcaatggagtttc |
263 |
Q |
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| T |
13073278 |
agtgaattcttctggttatctttgatgttctctcaatggagtttc |
13073322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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