View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2219_low_2 (Length: 256)
Name: NF2219_low_2
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2219_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42313707 - 42313936
Alignment:
| Q |
1 |
tgatcgtttgtacataattttgatcaagtcaaattgttttcatataatataatctattctaagaaagtggtaagttgtttcataagcaacaaaccctaac |
100 |
Q |
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| T |
42313707 |
tgatcgtttgtacataattttgatcaagtcaaattgttttcatataatataatctattctaagaaagtggtaagttgtttcataagcaacaaaccctaac |
42313806 |
T |
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| Q |
101 |
ttatcactgataacttaccactgataatcagcatattttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttcactaggca |
200 |
Q |
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| T |
42313807 |
--------------ttaccactgataatcagcatgttttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttcactaggca |
42313892 |
T |
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| Q |
201 |
cagttgctttcagagattctcgaaacagctccgccaattgcttc |
244 |
Q |
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| T |
42313893 |
cagttgctttcagagattctcgaaacagctccgccaattgcttc |
42313936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 47978732 - 47978807
Alignment:
| Q |
115 |
ttaccactgataatcagcatattttacaccatttttatttgcaacacatgcttcaactaagggaacaacatcaggttca |
193 |
Q |
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| T |
47978732 |
ttaccattgataatcagcatgtttaacaccgttttt---tggaacacaagcatcaattaagggaacaacatcaggttca |
47978807 |
T |
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