View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2219_low_4 (Length: 672)
Name: NF2219_low_4
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2219_low_4 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 101795 - 102266
Alignment:
| Q |
10 |
aaaaatatatcaaagaggtgatacgcacttacatttggatcttttgcttcaactagttattacttaggctttaaatttccttactttgactaactagtta |
109 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101795 |
aaaattatatcaaagaggtgatacacacttacatttggatcttttgcttcaactagttattacttaggctttaaatttccttactttgactaactagtta |
101894 |
T |
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| Q |
110 |
gagctttttgctttaaatcatcaaattcttcaaatgtatctcttcaaatgaaaatttaaattaatttttctaactgcttacaatttcaaaaattacattg |
209 |
Q |
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| T |
101895 |
gag-tttttgctttaaatcatcaaattcttcaaatgtatctcttcaaatgaaaatttaaattaatttttctaactgcttacaatttcaaaaattacattg |
101993 |
T |
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| Q |
210 |
gcgatttttnnnnnnnggaagtgcaatacgaagtagtactcactctggctttgaatataagtagaaaagtagatcaattggaccaaatactt---ataag |
306 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
101994 |
gcgatttttaaaaaaaggaagtgcaatacgaagtagtactcactctggctttgaatataagtagaaaagtagatcaattggaccaaatactttatataag |
102093 |
T |
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| Q |
307 |
agtagagagtataagtaaaaacaagtttagaccacaacacactaacatctcacgaggctattgtatatgtagtatatatattaaacctaacatcactaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
102094 |
agtagagagtataagtaaaaacaagtttagaccacaacacactaacatctcacgaggctattgtatctgtagtatatatattaaacctaacatcactaga |
102193 |
T |
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| Q |
407 |
cagcagacactaaaattagaggctacaaaaataatgttgaaatgattgatatattagataagactcaagagta |
479 |
Q |
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| T |
102194 |
cagcagacactaaaattagaggctacaaaaataatgttgaaatgattgatatattagataagactcaagagta |
102266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 469 - 643
Target Start/End: Complemental strand, 106902 - 106718
Alignment:
| Q |
469 |
actcaagagtaaagactcacgcaagttatagataaattataaacacttcacctatttacttcnnnnnnnnn----------gtttcagtaacatatttgt |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
106902 |
actcaagagtaaagactcacgcaagttatagataaattataatcacttcacctatttactttttttgttttttttttttttgtttcagtaacatatttgt |
106803 |
T |
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| Q |
559 |
tttaatgggttgaattagatctaaaatttaatatgatattaaaacttatcgtaaattggttaattagttactcactatcattcac |
643 |
Q |
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| T |
106802 |
tttaatgggttgaattagatctaaaatttaatataatattaaaacttatcgtaaattagttaattagttactcactatcattcac |
106718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 41121354 - 41120883
Alignment:
| Q |
10 |
aaaaatatatcaaagaggtgatacgcacttacatttggatcttttgcttcaactagttattacttaggctttaaatttccttactttgactaactagtta |
109 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121354 |
aaaattatatcaaagaggtgatacacacttacatttggatcttttgcttcaactagttattacttaggctttaaatttccttactttgactaactagtta |
41121255 |
T |
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| Q |
110 |
gagctttttgctttaaatcatcaaattcttcaaatgtatctcttcaaatgaaaatttaaattaatttttctaactgcttacaatttcaaaaattacattg |
209 |
Q |
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| T |
41121254 |
gag-tttttgctttaaatcatcaaattcttcaaatgtatctcttcaaatgaaaatttaaattaatttttctaactgcttacaatttcaaaaattacattg |
41121156 |
T |
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| Q |
210 |
gcgatttttnnnnnnnggaagtgcaatacgaagtagtactcactctggctttgaatataagtagaaaagtagatcaattggaccaaatactt---ataag |
306 |
Q |
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| T |
41121155 |
gcgatttttaaaaaaaggaagtgcaatacgaagtagtactcactctggctttgaatataagtagaaaagtagatcaattggaccaaatactttatataag |
41121056 |
T |
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| Q |
307 |
agtagagagtataagtaaaaacaagtttagaccacaacacactaacatctcacgaggctattgtatatgtagtatatatattaaacctaacatcactaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41121055 |
agtagagagtataagtaaaaacaagtttagaccacaacacactaacatctcacgaggctattgtatctgtagtatatatattaaacctaacatcactaga |
41120956 |
T |
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| Q |
407 |
cagcagacactaaaattagaggctacaaaaataatgttgaaatgattgatatattagataagactcaagagta |
479 |
Q |
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| T |
41120955 |
cagcagacactaaaattagaggctacaaaaataatgttgaaatgattgatatattagataagactcaagagta |
41120883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 469 - 643
Target Start/End: Complemental strand, 41119978 - 41119794
Alignment:
| Q |
469 |
actcaagagtaaagactcacgcaagttatagataaattataaacacttcacctatttacttcnnnnnnnnn----------gtttcagtaacatatttgt |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
41119978 |
actcaagagtaaagactcacgcaagttatagataaattataatcacttcacctatttactttttttgttttttttttttttgtttcagtaacatatttgt |
41119879 |
T |
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| Q |
559 |
tttaatgggttgaattagatctaaaatttaatatgatattaaaacttatcgtaaattggttaattagttactcactatcattcac |
643 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41119878 |
tttaatgggttgaattagatctaaaatttaatataatattaaaacttatcgtaaattagttaattagttactcactatcattcac |
41119794 |
T |
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