View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2219_low_8 (Length: 393)
Name: NF2219_low_8
Description: NF2219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2219_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 19098354 - 19098550
Alignment:
| Q |
30 |
gaaaatgaaaaagaatgcatggctctaagttctaaagaagttgaggcatgcttgtggtatataaggtttcaagtttgaatttattcttgtgatgtaaata |
129 |
Q |
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| T |
19098354 |
gaaaatgaaaaagaatgcatggctctaagttctaaagaagttgaggcatgcttgtggtatataaggtttcaagtttgaatttattcttgtgatgtaaata |
19098453 |
T |
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| Q |
130 |
ttgcatttgaaatgagaagtttaaattaaaaagaggtttgacattatgatcaaagtacgtaggaaatgaaatagagttggaaacttgattttgtgag |
226 |
Q |
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| T |
19098454 |
ttgcatttgaaatgagaagtttaaattaaaaagaggtttgacattatgatcaaagtacgtaggaaatgaaatagagttggaaacttgattttgtgag |
19098550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 19098791 - 19098889
Alignment:
| Q |
284 |
aagtttgtacaatggtatttgaatgattgaaaaataaattttcgga-gaacaataaagatggttgtggagcctaattattaaggttcgaagttgatatt |
381 |
Q |
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| T |
19098791 |
aagtttgtacaatggtatttgaataattgaaaaataaattttcggagggacaataaagatggttgcggtgcctaattattaaggttcgaagttgatatt |
19098889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 19098589 - 19098632
Alignment:
| Q |
249 |
gtgtgtatacaccaccttaatcgtaaatcctaactaagtttgta |
292 |
Q |
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| T |
19098589 |
gtgtgtatacaccaccttaatcgtaaatcctaactaagtttgta |
19098632 |
T |
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