View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_11 (Length: 485)
Name: NF2220_high_11
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 4657083 - 4656951
Alignment:
| Q |
344 |
tagtgaccttttgacaatccatgtaagcttgtaaaagactagaatattgaggatgagcaatgattttggcttttatagcttcagcttcaccattagaact |
443 |
Q |
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| T |
4657083 |
tagtgaccttttgacaatccatgtaagcttgtaaaagactagaatattgaggatgagcaatgattttggcttttatagcttcagcttcaacattagaact |
4656984 |
T |
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| Q |
444 |
gctaggactccctcctcctccttgatgatgatg |
476 |
Q |
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| T |
4656983 |
gcttggactccctcctcctccttgatgatgatg |
4656951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 4657248 - 4657132
Alignment:
| Q |
179 |
ggggtatgcttatttaaattgttatcatgatggtgggagtccaaatttaattcttgactgaaacaatcattaattattgattatagtattttacttatct |
278 |
Q |
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| T |
4657248 |
ggggtatgcttatttaaattgttatcatgatggtgggagtccaaatttaattcttgactgaaacaatcattaattattgattatagtattttacttatct |
4657149 |
T |
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| Q |
279 |
tgaagggaagggttaag |
295 |
Q |
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| T |
4657148 |
tgaagggaagggttaag |
4657132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 4657411 - 4657320
Alignment:
| Q |
18 |
ctctcgagttaactgaagatctttgccgtgcttcaaattcttgcctagacgcaaccaaacgagccaccacttcaggtggagctccaatctac |
109 |
Q |
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| T |
4657411 |
ctctcgagttaactgaagatctttgccgtgcttcaaattcttgcctagacgcaaccaaacgagccaccacttccggtggagctccaatctac |
4657320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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