View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2220_high_12 (Length: 454)
Name: NF2220_high_12
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_12 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 3 - 442
Target Start/End: Original strand, 8546936 - 8547369
Alignment:
| Q |
3 |
tttatttatttacttattttgtttctgttccttttgcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8546936 |
tttatttatttacttattttgtttctgttccttttgcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagat |
8547035 |
T |
|
| Q |
103 |
gcaataaaggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacat |
202 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547036 |
gcaataaagaaaaa------ggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacat |
8547129 |
T |
|
| Q |
203 |
tctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcacttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547130 |
tctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcacttt |
8547229 |
T |
|
| Q |
303 |
gagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8547230 |
gagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcaagattg |
8547329 |
T |
|
| Q |
403 |
gaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547330 |
gaagcaacaatcatgtgaagcttgatcctatattcaagct |
8547369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 8638186 - 8637759
Alignment:
| Q |
10 |
atttacttattttgtttctgttcctttt-gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaata |
108 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||| |||||| | | || ||||||||| ||||||||||| |
|
|
| T |
8638186 |
atttacttattttgtttgtgttaatttttgcaattcagtgtagccatgaaaagaaaaaagggttcaataactcttgctagggctagcctaagatgcaata |
8638087 |
T |
|
| Q |
109 |
aaggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgct |
208 |
Q |
| |
|
||| |||||| | || ||||||| |||| | |||||||| ||||| || || ||||||||||||||||| ||| |||| |||| |||||||| |
|
|
| T |
8638086 |
aagcaaaagggagag------ttgatgaatcagaaagtcatgatggactttttccatactttgataatcttccatcccacatcaccacccaaattctgct |
8637993 |
T |
|
| Q |
209 |
taaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagaga |
308 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||| || |
|
|
| T |
8637992 |
tcaactttccattaagtctcttctcatttgtaaatgtgtgtgcaagatttggaaaacaatgatttcggaaccacattttgctaaattgcaatttgagcga |
8637893 |
T |
|
| Q |
309 |
tcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagca |
408 |
Q |
| |
|
| | || |||| |||||| ||||| |||| | |||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
8637892 |
gcgccccttagtctcatgattcggacaaatgatggtagactagtgtcaagaaccatgtaccttcttgagtgtgatcatgaaaagtttgagattggaagca |
8637793 |
T |
|
| Q |
409 |
acaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |
|
|
| T |
8637792 |
acaatcatgtgaagcttgcgcctatatttaagct |
8637759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 133 - 442
Target Start/End: Original strand, 9073655 - 9073964
Alignment:
| Q |
133 |
atgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttct |
232 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||||||||| ||||| | ||||| ||||||| |
|
|
| T |
9073655 |
atgaggcagagagtcatgatgaacttttccctttttttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctcttct |
9073754 |
T |
|
| Q |
233 |
catttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttgg |
332 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| | |||||||||||| |||||||||||||||||| |||||| || ||| | || || | |||||| || |
|
|
| T |
9073755 |
catttgtaaatgtgtgtgcaaaatttggaaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatgattcgg |
9073854 |
T |
|
| Q |
333 |
acagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatccta |
432 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
9073855 |
acccttgacgatattagagtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagccta |
9073954 |
T |
|
| Q |
433 |
tattcaagct |
442 |
Q |
| |
|
|||||||||| |
|
|
| T |
9073955 |
tattcaagct |
9073964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 149 - 442
Target Start/End: Complemental strand, 8645397 - 8645104
Alignment:
| Q |
149 |
tgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtt |
248 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||| ||| ||| ||||||||| ||||| | |||| ||| || ||||||||||||||| ||||||| |
|
|
| T |
8645397 |
tgatgagctttatccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaaatctcttctcatttgtgaatgtgtg |
8645298 |
T |
|
| Q |
249 |
tgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagac |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||| ||| ||||||| ||||| |
|
|
| T |
8645297 |
tgcaagatttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcggatagatgactgtagac |
8645198 |
T |
|
| Q |
349 |
tagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| ||||||||||| | ||||||||||||| || ||| ||||||| |||||||| ||||| |
|
|
| T |
8645197 |
tagtgtcaagaactatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgcacctatatttaagct |
8645104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 149 - 365
Target Start/End: Complemental strand, 8678905 - 8678689
Alignment:
| Q |
149 |
tgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtt |
248 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||| ||| |||||||||| ||||| | |||| ||| || ||||||||||||||||||||||| |
|
|
| T |
8678905 |
tgatgaactttatccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttctcatttgtaaatgtgtg |
8678806 |
T |
|
| Q |
249 |
tgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagac |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||| ||| ||||||| ||||| |
|
|
| T |
8678805 |
tgcaagatttggaaaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcggatagatgactgtagac |
8678706 |
T |
|
| Q |
349 |
tagtgtcaagaaccatg |
365 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8678705 |
tagtgtcaagaaccatg |
8678689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 148 - 442
Target Start/End: Original strand, 1599238 - 1599532
Alignment:
| Q |
148 |
atgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgt |
247 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||| |||||||| ||||||||| |||||||||| |||||| || ||||| |||||||||||||||| ||| |
|
|
| T |
1599238 |
atgatgaagttttccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttctcatttgtaaatctgt |
1599337 |
T |
|
| Q |
248 |
ttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgataga |
347 |
Q |
| |
|
||||| |||||||||||| | ||||||||| |||||||||||||| |||||||||| |||||| | || |||| |||||| |||| ||||| || |
|
|
| T |
1599338 |
gtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattac |
1599437 |
T |
|
| Q |
348 |
ctagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
| ||| ||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||| ||||| |||||||| |
|
|
| T |
1599438 |
cgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcctatgttcaagct |
1599532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 125 - 442
Target Start/End: Complemental strand, 8530119 - 8529811
Alignment:
| Q |
125 |
aaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaag |
224 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| | ||| |
|
|
| T |
8530119 |
aaaagttgatgaggcagagagtcgtgag---ctttgcccttattttgataaacttccgtctcacctcactgcccacattctccttcgacttccatttaag |
8530023 |
T |
|
| Q |
225 |
tctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaa |
324 |
Q |
| |
|
||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||| | || |||| | |
|
|
| T |
8530022 |
tctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctca |
8529923 |
T |
|
| Q |
325 |
tgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagct |
424 |
Q |
| |
|
||||| | || ||| | | ||||||||||||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
8529922 |
tgattcgaac-----gcgaca-ccgagtgtcaagaaccctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagct |
8529829 |
T |
|
| Q |
425 |
tgatcctatattcaagct |
442 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
8529828 |
tgcacctatattcaagct |
8529811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 47 - 442
Target Start/End: Complemental strand, 8536761 - 8536375
Alignment:
| Q |
47 |
tgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaaggaaaaggaaaaggaaaagttgatgaggcagacaat |
146 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||| ||||||| | |||| |||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
8536761 |
tgtagtcatgaaaagaaaaaaaggttcaattgcccctgctagggctggccaaagacgcaataaatcaaaagggaaag------ttgatgaggcagaaagc |
8536668 |
T |
|
| Q |
147 |
catgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtg |
246 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| |||||| | | ||| |||||||||||| |||||| | ||||| |||||||||||||||| || |
|
|
| T |
8536667 |
catca---actttgcccttattttgataatcttccgtctcacgttattgctcacattctgcttcaacttccatttaagtcgcttctcatttgtaaatctg |
8536571 |
T |
|
| Q |
247 |
tttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatag |
346 |
Q |
| |
|
| ||||| |||||||||||| | ||||||||| |||||||||||||| ||||||||| ||||| | | |||| |||||| |||| ||||| |||| |
|
|
| T |
8536570 |
tgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatag |
8536471 |
T |
|
| Q |
347 |
actagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
| ||| |||||||| ||||||| |||||||| ||| ||| ||||||| ||||||||||||||| |||||||||| |||| ||||| |||||||| |
|
|
| T |
8536470 |
ccgagtttcaagaacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagct |
8536375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 9004667 - 9004353
Alignment:
| Q |
12 |
ttacttattttgtttctgttcctttt-gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaa |
110 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||| ||| |||||||| ||||||| || ||||||||| |
|
|
| T |
9004667 |
ttacttattttgtttcctttcctttttgcaatttagtgtagccatgagaagaagaaagggctcagttgcccctccaagggctatccaaaagtgcaataaa |
9004568 |
T |
|
| Q |
111 |
ggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgctta |
210 |
Q |
| |
|
| |||||| |||| ||||||||||||| | |||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9004567 |
gcaaaagggaaag------ttgatgaggcagaaagtcatga---actttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttc |
9004477 |
T |
|
| Q |
211 |
aacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatc |
310 |
Q |
| |
|
| |||| ||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| || | |
|
|
| T |
9004476 |
atcttcccattaagtctcttcttatttgtagatgtgtgtgcaagatttggaaaacaattatttcataaccacattttgctaaattgcaatttgagcgagc |
9004377 |
T |
|
| Q |
311 |
acaagtttgtctaatgatttggac |
334 |
Q |
| |
|
|| | || |||| |||||| |||| |
|
|
| T |
9004376 |
accaattagtctcatgattcggac |
9004353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 154 - 442
Target Start/End: Original strand, 2873480 - 2873768
Alignment:
| Q |
154 |
aactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaa |
253 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||| |||||| ||| |||||||||||||| |||| |||||| ||||| |
|
|
| T |
2873480 |
aactttgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaagtctcttctcatgtgtagatgtgtgtgcaa |
2873579 |
T |
|
| Q |
254 |
gatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtg |
353 |
Q |
| |
|
| |||||| ||| |||||||||||| |||||||||||||||||| |||||| || ||| |||| || | ||||| | | ||| ||| | |||| |
|
|
| T |
2873580 |
aacttggaatacacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtg |
2873679 |
T |
|
| Q |
354 |
tcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
||||||| | | |||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2873680 |
tcaagaaacctataccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattcgagct |
2873768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 151 - 442
Target Start/End: Original strand, 2844031 - 2844322
Alignment:
| Q |
151 |
atgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttg |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | ||| |||||||||| || || |||| ||| |||||||||||||| |||| |||||| || |
|
|
| T |
2844031 |
atgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtg |
2844130 |
T |
|
| Q |
251 |
caagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagacta |
350 |
Q |
| |
|
||| |||||||| ||| |||| ||||||| |||||||||||||||||| |||||| || ||| |||| || | ||||| | | ||| ||| | | |
|
|
| T |
2844131 |
caaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatatagga |
2844230 |
T |
|
| Q |
351 |
gtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
|||||||||| | | |||| |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
2844231 |
gtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattcgagct |
2844322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 97 - 442
Target Start/End: Original strand, 2855816 - 2856155
Alignment:
| Q |
97 |
gaagatgcaataaaggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgc |
196 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||| ||||||| ||| | |||||| |||||||||||| ||||||||| |||||||||| | ||| | |
|
|
| T |
2855816 |
gaagctgcaataaagtaaaagggaaaggaaaatttgatgatgca---agtcatga---actttgcccttactttgataattttccatctcaattaactac |
2855909 |
T |
|
| Q |
197 |
ccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattg |
296 |
Q |
| |
|
||||||||| || || |||| ||| |||||||||||||| |||| |||||| ||||| |||||||| ||| |||| ||||||| |||||||||||||||| |
|
|
| T |
2855910 |
ccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattg |
2856009 |
T |
|
| Q |
297 |
cactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcg |
396 |
Q |
| |
|
|| |||||| || ||| |||| || | ||||| | | ||| ||| | ||||||||||| | | |||| |||||||||||| |||||||||| | |
|
|
| T |
2856010 |
caatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttg |
2856109 |
T |
|
| Q |
397 |
agattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
2856110 |
agattggaagcaaaaatcatgtgaagcttgaccctatattcgagct |
2856155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 437
Target Start/End: Original strand, 2903986 - 2904269
Alignment:
| Q |
154 |
aactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaa |
253 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||| | ||| || | ||||| || || |||| ||| |||||||||||||| |||| |||||| ||||| |
|
|
| T |
2903986 |
aactttgtccttactttgataatcttccatttcacttaactaccgaaattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaa |
2904085 |
T |
|
| Q |
254 |
gatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtg |
353 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||| |||||| || ||| | | || | |||||| | | | || ||| | |||| |
|
|
| T |
2904086 |
aatttggaatacacttatttcagaacctaaattcgctaaattgcaatttgagcgagcaccaatcagtttcatgattagaaaattagataatatagaagtg |
2904185 |
T |
|
| Q |
354 |
tcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattc |
437 |
Q |
| |
|
||||||| | | |||| ||||||||| || |||||| |||||||| |||||| |||||||| |||||||||| | ||||||||| |
|
|
| T |
2904186 |
tcaagaaacctataccttcttgagtgcgaacctgaatagttcgagtttggaaccaacaatcttgtgaagcttaagcctatattc |
2904269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 8645516 - 8645404
Alignment:
| Q |
10 |
atttacttattttgtttctgttcctttt-gcaattaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctag---aagaagatgca |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||| | |||||| | |||| ||||||||| ||||||| ||| |
|
|
| T |
8645516 |
atttacttattttgtttgtgttcatttttgcaattcagtgtagccatgaaaagaaaaaacggttcaataactcctgctagggctagcctaagaagaagca |
8645417 |
T |
|
| Q |
106 |
ataaaggaaaagg |
118 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
8645416 |
ataaagcaaaagg |
8645404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 8679067 - 8679008
Alignment:
| Q |
10 |
atttacttattttgtttctgttcctttt-gcaattaagtgtagccatgaaaagaaaaaag |
68 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
8679067 |
atttacttattttgtttatgttcatttttgcaattcagtgtagccatgaaaaggaaaaag |
8679008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 8678996 - 8678954
Alignment:
| Q |
34 |
ttttgcaattaagtgtagccatgaaaagaaaaaaggattcaat |
76 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
8678996 |
ttttgcaattcagtgtagccatgaaaaggaaaaagggttcaat |
8678954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 31807159 - 31807272
Alignment:
| Q |
199 |
acattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgca |
298 |
Q |
| |
|
||||||| ||| ||||| |||||||||| || |||| |||||||||||||| | | ||||| ||| | ||||| || | ||||||||| ||| |||| |
|
|
| T |
31807159 |
acattctacttcgacttcccatcaagtctgttatcatatgtaaatgtgtttgtagaacatggaacacagtgatttctgacccacattttgccaaagtgca |
31807258 |
T |
|
| Q |
299 |
ctttgagagatcac |
312 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
31807259 |
ctttgagcgatcac |
31807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 125 - 442
Target Start/End: Original strand, 48360768 - 48361084
Alignment:
| Q |
125 |
aaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaag |
224 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| ||| |
|
|
| T |
48360768 |
aaaagttgatgaggtagagagtcatgatgaactttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaag |
48360867 |
T |
|
| Q |
225 |
tctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaa |
324 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| |||||||||||| | ||||||||| ||| |||||||||| |||||||||| |||||| | || |||| | |
|
|
| T |
48360868 |
tctcttcttatttgtaaatctgtgtgcaaaatttggaaaacactgatttcagaatcacaatttgctaaatcgcactttgagcgatcaccacttagtctca |
48360967 |
T |
|
| Q |
325 |
tgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagct |
424 |
Q |
| |
|
||||| |||| |||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
48360968 |
tgattcggac-cctgactatagaggagtgtcaagaaccatgtaccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagct |
48361066 |
T |
|
| Q |
425 |
tgatcctatattcaagct |
442 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
48361067 |
tacacctatattcaagct |
48361084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 149 - 442
Target Start/End: Complemental strand, 35781008 - 35780715
Alignment:
| Q |
149 |
tgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtt |
248 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||| ||| || |||||||||||||||| |||||| |
|
|
| T |
35781008 |
tgatgacctttacccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttctcatttgtagatgtgtg |
35780909 |
T |
|
| Q |
249 |
tgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgataga- |
347 |
Q |
| |
|
|||| || || |||||||| |||||||||| || ||||||||||||||||||||| ||||| | | |||| ||| || |||| | | |||| |
|
|
| T |
35780908 |
tgcataatctgaaaaacaatgatttcagaaccgcaatttgctaaattgcactttgagctatcaccaactagtctcatggttcggacccgtcgc-ttagat |
35780810 |
T |
|
| Q |
348 |
ctagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagcttgatcctatattcaagct |
442 |
Q |
| |
|
| |||||||||||| || ||| |||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||| || ||||| ||||| |
|
|
| T |
35780809 |
catgtgtcaagaaccctgcaccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagct |
35780715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 5912 - 5493
Alignment:
| Q |
10 |
atttacttattttgtttctgttcctttt-gcaattaagtgtag--ccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaa |
106 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||| |||||| |||||||||||||| ||| ||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
5912 |
atttacttattttgtttatgttcctttttgaaatttggtgtagagccatgaaaagaaaagagggttcaattacccctattagggctagccgaagatgcaa |
5813 |
T |
|
| Q |
107 |
taaaggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctg |
206 |
Q |
| |
|
||||| |||||| |||| |||| |||||||| | |||||| | ||| ||||||||||| ||||||||| |||||||| | |||||| | |
|
|
| T |
5812 |
taaagcaaaagggaaag------ttgaggaggcagaaagtcatga---atgttg---ttattttgatattcttccatcccacctcaccactcacattttt |
5725 |
T |
|
| Q |
207 |
cttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgaga |
306 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5724 |
cttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacattttgctaaattacactttgagc |
5625 |
T |
|
| Q |
307 |
gatcacaagtttgtctaatgatttggac-agatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaa |
405 |
Q |
| |
|
|||||| || |||| |||||| | || |||| || |||||| ||||||||||||| | |||| |||||| || || ||| ||||||| |||||||||| |
|
|
| T |
5624 |
gatcaccgattagtctcatgattcgaacaagat-actatagacgagtgtcaagaaccctataccttcttgaatgcgatcctaaaaagtttgagattggaa |
5526 |
T |
|
| Q |
406 |
gcaacaatcatgtgaagcttgatcctatattca |
438 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
5525 |
gcaacaatcatgtgaagcttgagcctatattca |
5493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 16717626 - 16717206
Alignment:
| Q |
10 |
atttacttattttgtttctgttccttttgcaa-ttaagtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaata |
108 |
Q |
| |
|
|||| |||||||||||| |||||||||| || || || ||||||||||||||||||||| |||||| |||| || |||||||| ||||||||||| |
|
|
| T |
16717626 |
atttgcttattttgtttatgttccttttttaaatttggtatagccatgaaaagaaaaaagggttcaatcacccccgtaagggctagccaaagatgcaata |
16717527 |
T |
|
| Q |
109 |
aaggaaaaggaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgct |
208 |
Q |
| |
|
|| ||||| | | || |||| |||||||| | | |||||| | ||| |||||||||| ||||||||| |||||||| ||||||||| |||| |
|
|
| T |
16717526 |
aaagaaaatggagag------ttgaggaggcagaaagt---gatgaatgtcgccactattttgatattcttccatcccacctcaccgcccacattttgct |
16717436 |
T |
|
| Q |
209 |
taaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagaga |
308 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
16717435 |
tcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaaagaatgatttcagaatcgcattttgctaaattacactttgagcaa |
16717336 |
T |
|
| Q |
309 |
tcacaagtttgtctaatgatttggac-agatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagc |
407 |
Q |
| |
|
|||| | || |||| |||||| | || |||| || ||| || ||||||||||||| | |||| ||| ||||| || || |||||||| |||||||||||| |
|
|
| T |
16717335 |
tcaccaattagtctcatgattcgaacaagat-actataaacgagtgtcaagaaccctctaccttctagagtgcgatccagaaaagtttgagattggaagc |
16717237 |
T |
|
| Q |
408 |
aacaatcatgtgaagcttgatcctatattca |
438 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |
|
|
| T |
16717236 |
aacaatcatgtgaatcttgagcctatattca |
16717206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 125 - 442
Target Start/End: Complemental strand, 9444280 - 9443972
Alignment:
| Q |
125 |
aaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaag |
224 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| | ||| |
|
|
| T |
9444280 |
aaaagttgatgaggcagagagtcgtgag---ctttgcccttattttgataatcttccgtctcacctcactgcccacattctccttcgacttccatttaag |
9444184 |
T |
|
| Q |
225 |
tctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaa |
324 |
Q |
| |
|
||| ||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||| | || |||| | |
|
|
| T |
9444183 |
tctgttctcatttgtaaatctgtgtgcaaagtttggaaaacaatgatttcagaatcacaatttgctaaattgcactttgagcgatcaccaattagtctca |
9444084 |
T |
|
| Q |
325 |
tgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttcgagattggaagcaacaatcatgtgaagct |
424 |
Q |
| |
|
||||| | || |||| | | ||||||||||||| | |||| ||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
9444083 |
tgattcgaac-----acgaca-ccgagtgtcaagaaccctataccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagct |
9443990 |
T |
|
| Q |
425 |
tgatcctatattcaagct |
442 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
9443989 |
tgcacctatattcaagct |
9443972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 5131662 - 5131604
Alignment:
| Q |
158 |
ttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
5131662 |
ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc |
5131604 |
T |
|
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 25290664 - 25290757
Alignment:
| Q |
212 |
acttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattgcactttgag |
305 |
Q |
| |
|
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|
|
| T |
25290664 |
acttcccatcaagtctgttctcgtatgtaaatgtgtttgtagaacatggaacacagtgatttcagatccacattttgccaaagtgcactttgag |
25290757 |
T |
|
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