View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_17 (Length: 400)
Name: NF2220_high_17
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 33354239 - 33353863
Alignment:
| Q |
6 |
agaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaaggttccaaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33354239 |
agaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaaggttccaaaa |
33354140 |
T |
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| Q |
106 |
atacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgatatcaaaggta |
205 |
Q |
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| T |
33354139 |
atacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgatatcaaaggta |
33354040 |
T |
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| Q |
206 |
tgattgattttaaattttagaaatagcaaaaacaattactggcttatgatatcgactatgtgcctactggcttatttgaccttactagcacaaacacttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33354039 |
tgattgattttaaattttagaaatagcaaaaacacttactggcttatgatatcgactatgtgcctactggcttatttgaccttactagcaaaaacacttg |
33353940 |
T |
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| Q |
306 |
ttcctatatggtagagattatggaaaaaacttaagagttatccatcagctgtttttcagcttatttctataagttct |
382 |
Q |
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| T |
33353939 |
ttcctatatggtagagattatggaaaaaacttaagagttgtccatcagctgtttttcggcttatttctataagttct |
33353863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 33347201 - 33346981
Alignment:
| Q |
4 |
agagaactggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaaggttccaa |
103 |
Q |
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| T |
33347201 |
agagaactggctagggatgctgtgaggaaatccatggtccttctaaaaaatggtaaatctcctgagaagcctttgttacctcttcctaaaaaggttccaa |
33347102 |
T |
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| Q |
104 |
aaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaaggagtcaatggcaacgatgatatcaaagg |
203 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33347101 |
agatacttgtggccggaagccatgcaaataatctaggacatcagtgcggtggctggaccattgaatggcaaggagtcagtggcaacgatgatatcaaagt |
33347002 |
T |
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| Q |
204 |
tatgattgattttaaatttta |
224 |
Q |
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||||||| |||| ||||||| |
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| T |
33347001 |
tatgattagtttttaatttta |
33346981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 33346963 - 33346880
Alignment:
| Q |
256 |
atcgactatgtgcctactggcttatttgaccttactagc----acaaacacttgttcctatatggtagagattatggaaaaaac |
335 |
Q |
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| T |
33346963 |
atcgactatgtgccttctggcttatttgaccatactagctagcaaaaacacttgttcctgtatggtagagattatggaaaaaac |
33346880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 9991840 - 9992006
Alignment:
| Q |
11 |
tggctagggaagctgtaaggaaatccatggtccttctaaaaaatggtaaatctgctgagaagcctttgttacctcttcctaaaaaggttccaaaaatact |
110 |
Q |
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|||||||||||||||| |||||||| |||| || |||| |||||| || |||||| ||||| | | |||||||||||||||| |||||||||||| |
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| T |
9991840 |
tggctagggaagctgtgaggaaatcattggtactattaaagaatggtgaaaatgctgataagccgcttcttcctcttcctaaaaaggctccaaaaatact |
9991939 |
T |
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| Q |
111 |
tgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga |
177 |
Q |
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|| || ||||| ||||| |||||||||||||||| |||||||| ||||||||| | ||||||||| |
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| T |
9991940 |
cgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcagtggcaagga |
9992006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 9999046 - 9999141
Alignment:
| Q |
82 |
cctcttcctaaaaaggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga |
177 |
Q |
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|||||||||||||||| | | ||||||||||| || ||||| ||||| |||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
9999046 |
cctcttcctaaaaaggcttccaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaagga |
9999141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 10004762 - 10004857
Alignment:
| Q |
82 |
cctcttcctaaaaaggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga |
177 |
Q |
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| T |
10004762 |
cctcttcctaaaaagtcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaagga |
10004857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 10013300 - 10013395
Alignment:
| Q |
82 |
cctcttcctaaaaaggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga |
177 |
Q |
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|||||||||||||||| ||||||||||||||| || ||||||||||| ||||| ||||| |||| |||||||| ||||||||| |||||||||| |
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| T |
10013300 |
cctcttcctaaaaaggctccaaaaatacttgttgctggaagccatgctgataatataggaaatcaatgtggtggatggaccattacatggcaagga |
10013395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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