View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_2 (Length: 781)
Name: NF2220_high_2
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 50572096 - 50572630
Alignment:
| Q |
18 |
ttctcttcaggtgagatcacttttcactagaccctctttagggatttttcattcatttggaattgtaaacctgtatttatcgatgagatcatatactcac |
117 |
Q |
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| T |
50572096 |
ttctcttcaggtgagatcacttttcactagaccctctttagggatttttcattcatttggaattgtaaacctgtatttatcaatgagatcatatactcac |
50572195 |
T |
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| Q |
118 |
cacttgttattatttgttatttgcttaaacccttcaaaattattattttttcctcagaaaaaagggtcattggatgctgaggagcaggttggaaaggctt |
217 |
Q |
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| T |
50572196 |
cacttgt----------tatttgcttaaacccttcaaaattattattttttcctcagaaaaaagggtcattggatgctgaggagcaggttggaaaggctt |
50572285 |
T |
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| Q |
218 |
atgcacgtgccggtgaactacagaagcaggtcatgtatgaaggagataattgatatattatgcaatgattgttattctttgtgcatagtctgaaattctt |
317 |
Q |
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| T |
50572286 |
atgcacgtgccggtgaactacagaagcaggtcatgtatgaaggagataattgatatattatgcaatgattgttattctttgtgcatagtctgaaattctt |
50572385 |
T |
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| Q |
318 |
aatgcaggttgacaagcttaaaagcgaactcgaagcacaaaacagtgagaaagtgaactgggaatctcgggtagccaagttagagaaaaagattcatgat |
417 |
Q |
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| T |
50572386 |
aatgcaggttgacaagcttaaaagcgaactcgaagcacaaaacagtgagaaagtgaactgggaatctcgggtagccaagttagagaaaaagattcatgat |
50572485 |
T |
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| Q |
418 |
ttgaactcaaaactagaggatgtaagttgtacacttggctagattgtttaattttgtttagaagtaaatctgagttttatgactagttcctattcttgtt |
517 |
Q |
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| T |
50572486 |
ttgaactcaaaactagaggatgtaagttgtacacttggctagattgtttaattttgtttagaagtaaatctgagttttatgactagttcctattcttgtt |
50572585 |
T |
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| Q |
518 |
tgtgtgtgtatgtattattgcaaaagaagtttttgcagtcatgga |
562 |
Q |
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| T |
50572586 |
tgtgtgtgtgtgtattattgcaaaagaagtttttgcagtcatgga |
50572630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 635 - 769
Target Start/End: Original strand, 50572703 - 50572837
Alignment:
| Q |
635 |
gcaaaatgagatgcttattaagtaaaccaacccattctgattgtgatcagcatgctcagaagttacctctgctaacttcttttatctgtataattcagtc |
734 |
Q |
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| T |
50572703 |
gcaaaatgagatgcttattaagtaaacaaacacattctgattgtgatcagcatgctcagaagttacctctgctaacttcttttatctgtataattcagtc |
50572802 |
T |
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| Q |
735 |
cgcctttactacactcccacaactaccacttccta |
769 |
Q |
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| T |
50572803 |
cacctttactacactcccacaactaccacttccta |
50572837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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