View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_3 (Length: 705)
Name: NF2220_high_3
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 11 - 688
Target Start/End: Complemental strand, 50109148 - 50108471
Alignment:
| Q |
11 |
catcatcactaattctatcaatgtctgtcaactacttgtcttctatgaaatcaacatcacaacatccgataagtttcttcataacaacataataaaactt |
110 |
Q |
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| T |
50109148 |
catcatcactaattctatcaatgtctgtcaactacttgtcttctatgaaatcaacatcacaacatctgataagtttcttcataacaacataataaaactt |
50109049 |
T |
|
| Q |
111 |
gtaacgagccccatctaggtagtagccactaaacacacaattttgactctttacaggatgctttacatccaaaaacatgtaagtgatcataagaaacttt |
210 |
Q |
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| T |
50109048 |
gtaacgagctccatctaggtagtagccactaaacacacaattttgactctttacaggatgctttacatccaaaaacatgtaagggatcataagaaacttt |
50108949 |
T |
|
| Q |
211 |
cttatctaaccaaatcattgttgacagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatct |
310 |
Q |
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| T |
50108948 |
cttatataaccaaatcatcgttggcagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatct |
50108849 |
T |
|
| Q |
311 |
tgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaacttatnn |
410 |
Q |
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| T |
50108848 |
tgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaacttat-c |
50108750 |
T |
|
| Q |
411 |
nnnnnnnnctaaataaattaagataaaatagaatcgccaaggccaccctaagttaacattaccctccacccctgatctcatgtacttcatattgcaagga |
510 |
Q |
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| T |
50108749 |
aaaaaaaactaaataaattaagataaaatagaatcgccaaggccaccctaagttaacattaccctccacccctgatctcatgtacttcatattgcaagga |
50108650 |
T |
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| Q |
511 |
ctgatatggtgaaagac-ttgggacttgtacaattgtgttaaatgattcacccccaaacaattttggaagctctttctttgataataaacatttaactct |
609 |
Q |
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| T |
50108649 |
ctgatatggtgaaagactttgggacttgtgcaattgtgttaaatgattcacccccaaacaattttggaagctctttctttgataataaacatttaactct |
50108550 |
T |
|
| Q |
610 |
tttcaaccaatgttctattcatcctctcggtaacaccactcaaacatagagacgtataatgtctaatctaattctctct |
688 |
Q |
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| T |
50108549 |
tttcaaccaatgttctattcatcctctcggtaacaccactcaaacatagagacgtataatgtctaatctaattctctct |
50108471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 4430064 - 4430105
Alignment:
| Q |
367 |
tatattatgagagtggctaaacacaataatacactaacttat |
408 |
Q |
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| T |
4430064 |
tatattattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 28228603 - 28228738
Alignment:
| Q |
70 |
caacatccgataagtttcttcataacaacataataaaacttgtaacgagccccatctaggtagtagccactaaacacacaattttgactctttacaggat |
169 |
Q |
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| T |
28228603 |
caacatccgataagtttcttcatatcacaatcataaaacctgtaatcagctccatctaagtcatagcaaagaaacatacaatgttgactcttcaca-tat |
28228701 |
T |
|
| Q |
170 |
gctttacatccaaaaacatgtaagtgatcataagaaa |
206 |
Q |
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| ||| ||||| |||||| |||||| |||||||||| |
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| T |
28228702 |
gttttgcatccgaaaacacataagtggtcataagaaa |
28228738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
270 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
334 |
Q |
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| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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