View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_34 (Length: 237)
Name: NF2220_high_34
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8071332 - 8071549
Alignment:
| Q |
1 |
catggttcaattggctttgggattgctttttccttgagaatacagcctttcaaatttcaatacagatataggttagttaaccaacaataacgttctaann |
100 |
Q |
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| T |
8071332 |
catgtttcaattggctttgggattgctttttccttgagaacacaacttttcaaatttcaatacagatataggttagttaaccaacaataacgttctaatt |
8071431 |
T |
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| Q |
101 |
nnnnnngttaacaagaataaagttctaattaaattttgtatagctggataatgtataggtaaagaagctgaactaacaatacttataagtacacatttct |
200 |
Q |
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| T |
8071432 |
ttttt-gttaacaagaataaagttctaattaaattttgtatagctggataatgtataggtaaagaagttgaactaacaatacttataagtacacatttct |
8071530 |
T |
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| Q |
201 |
caccaacttacccttgctt |
219 |
Q |
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| T |
8071531 |
caccaactcacccttgctt |
8071549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 8040421 - 8040508
Alignment:
| Q |
10 |
attggctttgggattgctttttccttgagaatacagcctttcaaatttcaatacagatataggttagttaaccaacaataacgttcta |
97 |
Q |
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| T |
8040421 |
attgcctttgagattgctttctctttgagaacacagcctttcaaatttcaatgcagatatgagttagttaaccaacaataacgttcta |
8040508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 8040539 - 8040597
Alignment:
| Q |
162 |
aagaagctgaactaacaatacttataagtacacatttctcaccaacttacccttgctta |
220 |
Q |
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| T |
8040539 |
aagaagttgaactaacaatacttataagtacacaaatctcaccaactcacccttgctta |
8040597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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