View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2220_high_36 (Length: 235)
Name: NF2220_high_36
Description: NF2220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2220_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 37948370 - 37948483
Alignment:
| Q |
119 |
ctcttcgatcttcattataagaaaaaagaatagacacatttgacaacagtgttccaaaagttagggttacttcaaccttaattcaacaagtctcaaatta |
218 |
Q |
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| T |
37948370 |
ctcttcgatcttcattataagaaaaaagaatagacacatttgacaaaagtgttccaaaagttagggttacttcaaccttaattcaacaagtctcaaatta |
37948469 |
T |
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| Q |
219 |
gttctgtaactaac |
232 |
Q |
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| T |
37948470 |
gttctgtaactaac |
37948483 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37948261 - 37948334
Alignment:
| Q |
1 |
tatttttcgtagggtaatttagtgttccaaaggttaggcaattgaatctgaacatctgaatgacaaatgtgaaa |
74 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37948261 |
tattttttgtagggtaatttagtgttccaaaggttaggcaattgaatctgaacatctgaatgacaaatgtgaaa |
37948334 |
T |
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